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CSBC/PSON Publications Schema

Owned by Brian White (Unlicensed)
Last updated: Apr 16, 2020 by James Eddy (Unlicensed)
2 min read

Source data

Synapse  Table: https://www.synapse.org/#!Synapse:syn21868591/tables/

DEPRECATED Synapse Table:  https://www.synapse.org/#!Synapse:syn10923842/tables/

Explore page config

Type / name of card: "Publications"

Fields to show: 5

Facets should be ordered in the order they appear in this table.

Any column that should be faceted in the portal (i.e., faceted on an explore page or have a column facet on a table) must be faceted on the corresponding Synapse table/view. There is a performance penalty incurred with each additional facet – hence, facet only those columns needed by the portal and limit to those likely to be useful.

Display Name

Column Name

Column Type

Link Format

Facet Y/N

Facet Order

Card UI Mapping

Destination

Link Query Key

Link  Value Column

Searchable Y/N

Search Order

Search Hint Text

Display Name

Column Name

Column Type

Link Format

Facet Y/N

Facet Order

Card UI Mapping

Destination

Link Query Key

Link  Value Column

Searchable Y/N

Search Order

Search Hint Text



authors

STRING



N

NA

subTitle







Y

2

e.g. LastName

DOI

doi

STRING



N

NA

secondaryLabels[7]

DOI (with prefix https://dx.doi.org/)



doi

Y

5

e.g. 10.1158/2159-8290.CD-17-0222

Journal

journal

STRING



N

NA

secondaryLabels[0]







Y

4

e.g. Nucleic Acids Res



pubMedUrl

STRING

url

N

NA









N

NA



Publication Title

publicationTitle

STRING



N

NA

title

PubMed record



pubMedUrl

Y

1

e.g. methylation

Publication Year

publicationYear

INTEGER



Y

5

secondaryLabels[1]







Y

10

e.g. 2018

Keywords

keywords

STRING



N

NA

secondaryLabels[6]







Y

3

e.g. scRNA-seq

Theme

theme

STRING_LIST*



Y

1

secondaryLabels[2]







Y

6

e.g. tumor-immune

Tumor Type

tumorType

STRING_LIST*



Y

3

secondaryLabels[3]







Y

8

e.g. Skin Cutaneous Melanoma

Tissue

tissue

STRING_LIST*



Y

4

secondaryLabels[4]







Y

9

e.g. Prostate gland

Assay

assay

STRING_LIST*



Y

2

secondaryLabels[5]







Y

7

e.g. RNA-seq

Grant Name

grantName

STRING_LIST*

portal query (each)

Y

6

secondaryLabels[8]

Grants/DetailsPage

grantName

grantName

Y

11

e.g. immunology

Consortium

consortium

STRING_LIST*



Y

7

secondaryLabels[9]







N

NA

e.g. PS-ON

Dataset

dataset

STRING_LIST*

portal query (each)

N

NA

secondaryLabels[10]

Datasets/DetailsPage

datasetAlias

dataset

N

NA

e.g. syn13857535

*<TYPE>_LIST columns for multi-value annotations not yet implemented