Tools Schema
- Anna Greenwood (Unlicensed)
Owned by Anna Greenwood (Unlicensed)
Some of these fields have Synapse annotations defined: https://github.com/Sage-Bionetworks/synapseAnnotations/blob/master/synapseAnnotations/data/tool.json
| Field Name | Description | Synonyms | Column Type | Facet (Y/N) | Required (Y/N) | Destination | Notes | Applies to Which Tool Type |
|---|---|---|---|---|---|---|---|---|
| toolName | name, methodName | string | N | Y | link | name is a clickable link, URL sourced from "link" column | computational, experimental, clinical | |
| description | summary | large text | N | Y | computational, experimental, clinical | |||
| link | link to access the tool | link | URL | N | Y | computational, experimental, clinical | ||
| consortium | Key for mapping | organization, program, fundingAgency | string | Y | N | computational, experimental, clinical | ||
| grant | Key for mapping | project | string | Y | N | computational, experimental, clinical | ||
| study | Key for mapping | string | Y | N | computational, experimental, clinical | |||
| contributor | contributor name | contact | string | N | N | computational, experimental, clinical | ||
| contributorContact | synID or email address | entity? email? | N | N | computational, experimental, clinical | |||
| toolType | e.g. bench science/experimental, computational, or clinical | string | Y | N | also associated with different icons? | computational, experimental, clinical | ||
| subType | mouse model, cell line, R shiny tool, etc | string | Y | N | ***is this needed? | |||
| reagentType | mouse model, cell line, viral vector | string | Y | N | experimental | |||
| softwareType | type of Software, e.g. script, packageLibrary, container, graphical user interface, web user interface, web application | string | Y | N | computational | |||
| softwareLanguage | software language e.g. R, python, matlab | string | Y | N | computational | |||
| inputDataType | source data for tool e.g. geneExpression, proteomics | string | Y | N | computational | |||
| outputDataType | output data of tool e.g. genomicVariants, image, proteomics | string | Y | N | computational | |||
| diagnosis | e.g. Late onset AD, Familial AD | tumor type | string | Y | N | computational, experimental, clinical | ||
| modelType | e.g. APP mouse model, Trem2 model | string | Y | N | experimental | |||
| outputDatasets | datasets generated using this tool or about this tool | entity | N | N | is this data using the tool or about the tool? ie rnaseq data from a workflow tool vs rnaseq data ON a mouse model | computational, experimental, clinical | ||
| publications | list of publications? | large text | N | N | what is the expected display and behavior? | computational, experimental, clinical | ||
| controlledAccess | boolean | N | N | computational, experimental, clinical | ||||
| documentation | link to wiki or PDF containing documentation, possibly in Synapse | URL | N | N | computational, experimental, clinical | |||
| featured | boolean | N | N | computational, experimental, clinical |