Title: Colon CIMP  
Owner: Vitalina Komashko
Creator: Vitalina Komashko Feb 16, 2012
Last Changed by: Vitalina Komashko Jul 09, 2012
Tiny Link: (useful for email) https://sagebionetworks.jira.com/wiki/x/R4CV
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Methylation (1)
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Children (20)
    Page: 27k - correlation of the processing batch with clinical variables in colon cancer
    Page: 27k platform - how to identify probes that overlap with known SNPs and repetitive regions
    Page: Attempt to reproduce the results in Shen 2007 using TCGA 450k data
    Page: CIMP markers
    Page: Clinical variables of interests
    Page: Colon cancer CIMP project proposal
    Page: Correlation of clinical variables with technical variables for 450k platform
    Page: De novo discovery of methylation clusters in TCGA CRC data
    Page: DNA mehylation data normalization
    Page: Forcing clusters in colon cancer using Shen or Laird markers for CIMP phenotype
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Time Editor  
Jul 09, 2012 22:43 Vitalina Komashko View Changes
Jul 09, 2012 22:42 Vitalina Komashko View Changes
Jun 21, 2012 20:07 Vitalina Komashko View Changes
Jun 01, 2012 20:53 Vitalina Komashko View Changes
Jun 01, 2012 20:53 Vitalina Komashko  
Outgoing Links
Methylation (20)     Page: Forcing clusters in colorectal cancer
    Page: Attempt to reproduce the results in Shen 2007 using TCGA 450k data
    Page: Laird (2006, 2011) markers
    Page: CIMP markers
    Page: IlluminaHumanMethylation450k.db Bioconductor package
    Page: Shen, 2007 CIMP CpGs on 450k platform
    Page: DNA mehylation data normalization
    Page: Re-analysis of the data presented in Hinoue 2012
    Page: Forcing clusters in colon cancer using Shen or Laird markers for CIMP phenotype
    Page: Normalization of cancer DNA methylation data (27k array platform)
    Page: Clinical variables of interests
    Page: De novo discovery of methylation clusters in TCGA CRC data
    Page: Shen, 2007 attempt to reproduce results with 27k platform
    Page: Relationship between various types of batches
    Page: Reading raw files (.idat)
    Page: 27k - correlation of the processing batch with clinical variables in colon cancer
    Page: 27k platform - how to identify probes that overlap with known SNPs and repetitive regions
    Page: Colon cancer CIMP project proposal
    Page: Correlation of clinical variables with technical variables for 450k platform
    Page: Laird markers on 27k platform