Results for PARC data set, treated samples (18K probes and 480 samples)

Sage Coexpression, organic correlation algorithm	Sage Coexpression, WGCNA correlation algorithm	WGCNA Coexpression
Unix space: 76.0 GB	Unix space: 83.5 GB	Unix space: 51.6 GB
Unix time: 4:52:21	Unix time: 4:07:34	Unix time: 1:38:55
	(file lost due to I/O error)
Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):		30.9%
Module co-membership comparison (vs. this column as a baseline):		grey turquoise blue red green brown yellow black magenta purple pink greenyellow tan salmon cyan 0 12115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 725 0 23 0 182 0 0 109 0 0 0 0 0 0 0 2 524 1 392 1 0 0 0 0 0 0 0 0 0 0 0 3 346 412 10 0 0 0 0 0 0 0 0 0 0 0 0 5 364 137 0 0 0 0 119 0 0 0 0 0 0 0 0 4 353 0 1 205 77 0 0 0 0 0 0 0 0 0 0 6 287 1 0 0 0 163 0 0 0 0 0 0 0 0 0 7 186 0 0 0 0 156 0 0 0 0 0 0 0 0 0 9 138 0 0 0 0 0 0 0 0 0 0 0 34 0 0 8 138 0 0 0 0 0 0 0 82 0 0 0 0 0 0 10 94 0 0 0 0 0 0 0 0 0 49 0 0 0 0 12 83 0 0 0 0 0 0 0 0 0 0 45 0 0 0 11 55 0 0 0 0 0 78 0 0 0 0 0 0 0 0 13 76 0 0 0 0 0 0 0 0 0 37 0 0 0 0 18 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 47 0 0 0 0 0 0 0 0 53 0 0 0 0 0 16 29 0 0 0 0 0 52 0 0 0 0 0 0 0 0 15 49 0 0 0 0 0 0 0 0 0 0 0 0 0 32 17 30 0 39 0 0 0 1 0 0 0 0 0 0 0 0 19 23 0 0 0 0 0 36 0 0 0 0 0 0 0 0 21 20 0 0 0 0 0 0 0 0 0 0 0 0 34 0 22 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0
	<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison. WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>

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