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Results - Methylation

Results - Methylation

Jul 27, 2011

Results for methylation data set  (27k probes and 555 samples)

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Unix space:  180.3 GB

Unix space: 187.1 GB

Unix space:  101.2 GB

Unix time:  24:45:34

Unix time: 19:40:23

Unix time: 5:11:05

(lost  file, due to I/O error)

(lost  file, due to I/O error)

Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):

 

9.5%

Module co-membership comparison (vs. this column as a baseline):

 

turquoise grey blue green brown yellow black pink red magenta purple
  1      15259  430   47     6   356    261     0    0   0       0      3
  0         32 6553    4     0    62     17     0    0  38       0      6
  2          0  503 1535     0     5      0     0    0  49       0      0
  3          0  556    0     0     0      0    78    0  19      40      0
  5          0   75    0   387     0      0     0    0   0       0      0
  4          0  327  309     0     0      0     0    0   0       0     23
  6          0  109    1     0   194      5     0    0   0       0      0
  7          1   28    0     0     2    115     0    0   0       0      0
  8          0    4    0     0     0      0     0   62   0       0      0
  10         0   38    0     0     0      0     0    0   0       0      0
  9          7    4    0     0     0     28     0    0   0       0      0

<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.


WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>