/
Install new R version on worker machines
Install new R version on worker machines
The problem
We committed to build the R client for 2 latest R <major>.<minor> version. However the latest R release version (3.5) is inconsistent across platform:
- On Ubuntu, the instruction to install the latest R version gives users R version 3.4.4. This is because the people who manages the artifacts for Ubuntu have not update their artifacts to R 3.5.
- On Mac, installing R version 3.5 corrupted R version 3.4. Re-installing R version 3.4 removed R version 3.5.
Also, CRAN notes that: "CRAN does not have Mac OS X systems and cannot check these binaries for viruses."
Proposal
The proposal to solve the problem above is to install from source for all 3 platforms: Linux, Mac, and Windows.
Ubuntu Instructions
Get the R source from https://cran.r-project.org/ under "R source" link on the left panel.
Download R source on Ubuntuwget https://cran.r-project.org/src/base/R-3/R-3.5.0.tar.gz
Unpack the zip file:
Unziptar -xf R-3.5.0.tar.gz
Compile the source code:
Compile./configure make
Then check the built system works correctly by
checkmake check
Then install
installsudo make install rhome=/usr/local/R/R-3.5.0
Make link for R <major>.<minor>
make linksudo ln -s R-3.5.0 R-3.5
Update the alternatives for R:
update alternativessudo update-alternatives --install /usr/local/bin/R R /usr/local/R/R-3.5/bin/R 50 --slave /usr/local/bin/Rscript Rscript /usr/local/R/R-3.5/bin/Rscript sudo update-alternatives --set R /usr/local/R/R-3.5/bin/R # to view all alternatives update-alternatives --config R # to fix broken links yes '' | sudo update-alternatives --force --all
Mac Instructions
Windows Instructions
, multiple selections available,
Related content
How to install the Synapse R Client
How to install the Synapse R Client
More like this
R Client Developer Bootstrap
R Client Developer Bootstrap
More like this
Notes on setting up EC2 instance to build rSynapseClient
Notes on setting up EC2 instance to build rSynapseClient
More like this
PythonEmbedInR Developer Bootstrap
PythonEmbedInR Developer Bootstrap
More like this
Updating the Python client version in the synapser package
Updating the Python client version in the synapser package
More like this
Developing and maintaining synapser and synapser
Developing and maintaining synapser and synapser
More like this