Mouse Naming Standards

These variables describe the mice in the Individual Metadata file.

Variable	Definition	Value
`genotype`	Genotype of animal that indicates littermate carriers vs noncarriers. Names derived from joining three Climb variables in this specific format: `gene-allele_genotype`	`3xTg-AD_carrier` `3xTg-AD_noncarrier` `5XFAD_carrier` `5XFAD_noncarrier` `Abca7-KI_heterozygous` `Abca7-KI_homozygous` `Abca7-KI_WT` `Abca7-KO_heterozygous` `Abca7-KO_homozygous` `Abca7-KO_WT` `Abca7-V1599M_heterozygous` `Abca7-V1599M_homozygous` `Abca7-V1599M_WT` `Abi3-S209F_heterozygous` `Abi3-S209F_homozygous` `Abi3-S209F_WT` `APOE2-KI_heterozygous` `APOE2-KI_homozygous` `APOE2-KI_WT` `APOE3-KI_heterozygous` `APOE3-KI_homozygous` `APOE3-KI_WT` `APOE4-KI_heterozygous` `APOE4-KI_homozygous` `APOE4-KI_WT` `APP 3&5_carrier` `APP 3&5_noncarrier` `APPswe_carrier` `APPswe_noncarrier` `B2M-KO_heterozygous` `B2M-KO_homozygous` `B2M-KO_WT` `Bin1-FLX_heterozygous` `Bin1-FLX_homozygous` `Bin1-FLX_WT` `Bin1-K358R_heterozygous` `Bin1-K358R_homozygous` `Bin1-K358R_WT` `Bin1-KI_heterozygous` `Bin1-KI_homozygous` `Bin1-KI_WT` `Bin1-KO_heterozygous` `Bin1-KO_homozygous` `Bin1-KO_WT` `C3-KO_heterozygous` `C3-KO_homozygous` `C3-KO_WT` `C5-D2_heterozygous` `C5-D2_homozygous` `C5-D2_WT` `C5-KO_heterozygous` `C5-KO_homozygous` `C5-KO_WT` `Cd2ap-KI_heterozygous` `Cd2ap-KI_homozygous` `Cd2ap-KI_WT` `Cd2ap-KO_heterozygous` `Cd2ap-KO_homozygous` `Cd2ap-KO_WT` `Ceacam1-KO_heterozygous` `Ceacam1-KO_homozygous` `Ceacam1-KO_WT` `Clasp2-KI_heterozygous` `Clasp2-KI_homozygous` `Clasp2-KI_WT` `Clasp2-KO_heterozygous` `Clasp2-KO_homozygous` `Clasp2-KO_WT` `Clu-KO_heterozygous` `Clu-KO_homozygous` `Clu-KO_WT` `Clu-rs2279590_KI_heterozygous` `Clu-rs2279590_KI_homozygous` `Clu-rs2279590_KI_WT` `Clu-rs9331888_heterozygous` `Clu-rs9331888_homozygous` `Clu-rs9331888_WT` `Clu-rs9331888nr_heterozygous` `Clu-rs9331888nr_homozygous` `Clu-rs9331888nr_WT` `CR1-KO_heterozygous` `CR1-KO_homozygous` `CR1-KO_WT` `CR1-long_heterozygous` `CR1-long_homozygous` `CR1-long_WT` `CR1-short_heterozygous` `CR1-short_homozygous` `CR1-short_WT` `CR2CR1_heterozygous` `CR2CR1_homozygous` `CR2CR1_WT` `Cx3cr1_heterozygous` `Cx3cr1_homozygous` `Cx3cr1_WT` `Cx3cr1-GFP_heterozygous` `Cx3cr1-GFP_homozygous` `Cx3cr1-GFP_WT` `D2Mit367-D2_heterozygous` `D2Mit367-D2_homozygous` `D2Mit367-D2_WT` `d4MIT251-D2_heterozygous` `d4MIT251-D2_homozygous` `d4MIT251-D2_WT` `Dlx6a-Cre_heterozygous` `Dlx6a-Cre_homozygous` `Dlx6a-Cre_WT` `Edn2-FLX_heterozygous` `Edn2-FLX_homozygous` `Edn2-FLX_WT` `Edn2-KO_heterozygous` `Edn2-KO_homozygous` `Edn2-KO_WT` `Emx1-Cre_heterozygous` `Emx1-Cre_homozygous` `Emx1-Cre_WT` `Epha1 -P460L_heterozygous` `Epha1 -P460L_homozygous` `Epha1 -P460L_WT` `Epha1-KI_heterozygous` `Epha1-KI_homozygous` `Epha1-KI_WT` `Epha1-KO_heterozygous` `Epha1-KO_homozygous` `Epha1-KO_WT` `Erc2-KI_heterozygous` `Erc2-KI_homozygous` `Erc2-KI_WT` `Erc2-KO_heterozygous` `Erc2-KO_homozygous` `Erc2-KO_WT` `Gad2-Cre_heterozygous` `Gad2-Cre_homozygous` `Gad2-Cre_WT` `Gamma_heterozygous` `Gamma_homozygous` `Gamma_WT` `Gpnmb_heterozygous` `Gpnmb_homozygous` `Gpnmb_WT` `Gpnmb-pyro_heterozygous` `Gpnmb-pyro_homozygous` `Gpnmb-pyro_WT` `Gpnmb-SEQ_heterozygous` `Gpnmb-SEQ_homozygous` `Gpnmb-SEQ_WT` `hAbeta-KI_LoxP_heterozygous` `hAbeta-KI_LoxP_homozygous` `hAbeta-KI_LoxP_WT` `hAPP-3/3_heterozygous` `hAPP-3/3_homozygous` `hAPP-3/3_WT` `hAPP-Arc_heterozygous` `hAPP-Arc_homozygous` `hAPP-Arc_WT` `hAPP-Aus_heterozygous` `hAPP-Aus_homozygous` `hAPP-Aus_WT` `hAPP-KO_heterozygous` `hAPP-KO_homozygous` `hAPP-KO_WT` `hAPP-SFL_heterozygous` `hAPP-SFL_homozygous` `hAPP-SFL_WT` `hAPP-Swe_heterozygous` `hAPP-Swe_homozygous` `hAPP-Swe_WT` `hTau-H1_heterozygous` `hTau-H1_homozygous` `hTau-H1_WT` `hTau-H2_heterozygous` `hTau-H2_homozygous` `hTau-H2_WT` `I134-KO_heterozygous` `I134-KO_homozygous` `I134-KO_WT` `IL1rapb-cKO_heterozygous` `IL1rapb-cKO_homozygous` `IL1rapb-cKO_WT` `IL1RAPex2-KO_heterozygous` `IL1RAPex2-KO_homozygous` `IL1RAPex2-KO_WT` `IL1RAPex3-KO_heterozygous` `IL1RAPex3-KO_homozygous` `IL1RAPex3-KO_WT` `J20_carrier` `J20_noncarrier` `Kif21b-KI_heterozygous` `Kif21b-KI_homozygous` `Kif21b-KI_WT` `Kif21b-KO_heterozygous` `Kif21b-KO_homozygous` `Kif21b-KO_WT` `Lyz2_heterozygous` `Lyz2_homozygous` `Lyz2_WT` `mApoe_heterozygous` `mApoe_homozygous` `mApoe_WT` `mApoe-KO_heterozygous` `mApoe-KO_homozygous` `mApoe-KO_WT` `Meox2-Cre_heterozygous` `Meox2-Cre_homozygous` `Meox2-Cre_WT` `mTau_heterozygous` `mTau_homozygous` `mTau_WT` `mTau-KO_heterozygous` `mTau-KO_homozygous` `mTau-KO_WT` `Mthfr-KI_heterozygous` `Mthfr-KI_homozygous` `Mthfr-KI_WT` `Mthfr-KO_heterozygous` `Mthfr-KO_homozygous` `Mthfr-KO_WT` `Mtmr4-KI_heterozygous` `Mtmr4-KI_homozygous` `Mtmr4-KI_WT` `Mtmr4-KO_heterozygous` `Mtmr4-KO_homozygous` `Mtmr4-KO_WT` `mTrem2-KO_heterozygous` `mTrem2-KO_homozygous` `mTrem2-KO_WT` `Nes_heterozygous` `Nes_homozygous` `Nes_WT` `NPC_heterozygous` `NPC_homozygous` `NPC_WT` `Picalm-H458R_heterozygous` `Picalm-H458R_homozygous` `Picalm-H458R_WT` `Plcg2-KI_heterozygous` `Plcg2-KI_homozygous` `Plcg2-KI_WT` `Plcg2-KO_heterozygous` `Plcg2-KO_homozygous` `Plcg2-KO_WT` `Plp1_heterozygous` `Plp1_homozygous` `Plp1_WT` `Psen1-3xTG_carrier` `Psen1-3xTG_noncarrier` `PSEN1-KI_heterozygous` `PSEN1-KI_homozygous` `PSEN1-KI_WT` `PSEN1dE9_carrier` `PSEN1dE9_noncarrier` `Ptprb-KI_heterozygous` `Ptprb-KI_homozygous` `Ptprb-KI_WT` `Shc2-KI_heterozygous` `Shc2-KI_homozygous` `Shc2-KI_WT` `Shc2-KO_heterozygous` `Shc2-KO_homozygous` `Shc2-KO_WT` `Snx1-KI_heterozygous` `Snx1-KI_homozygous` `Snx1-KI_WT` `Sorl1-KI_heterozygous` `Sorl1-KI_homozygous` `Sorl1-KI_WT` `Sorl1-KO_heterozygous` `Sorl1-KO_homozygous` `Sorl1-KO_WT` `Sox2-Cre_heterozygous` `Sox2-Cre_homozygous` `Sox2-Cre_WT` `Spi1-rs1377416_heterozygous` `Spi1-rs1377416_homozygous` `Spi1-rs1377416_WT` `Stat3-FLX_heterozygous` `Stat3-FLX_homozygous` `Stat3-FLX_WT` `Stat3-KO_heterozygous` `Stat3-KO_homozygous` `Stat3-KO_WT` `Thy1_heterozygous` `Thy1_homozygous` `Thy1_WT` `Tie2-GFP_heterozygous` `Tie2-GFP_homozygous` `Tie2-GFP_WT` `TM1A_carrier` `TM1A_noncarrier` `TM1C_carrier` `TM1C_noncarrier` `TM1D_carrier` `TM1D_noncarrier` `TMEM119_heterozygous` `TMEM119_homozygous` `TMEM119_WT` `Trem2-R47H_heterozygous` `Trem2-R47H_homozygous` `Trem2-R47H_NSS_heterozygous` `Trem2-R47H_NSS_homozygous` `Trem2-R47H_NSS_WT` `Trem2-R47H_WT` `XFP_heterozygous` `XFP_homozygous` `XFP_WT`
`genotypeBackground`	Genetic background of the model	`C57BL6J` `C57BL6N` `CC037` `CC041` `CC013` `CC006` `CC002` `CC017` `B6JCC037` `B6JCC041` `B6JCC013` `B6JCC006` `B6JCC002` `B6JCC017` `LOAD1` `LOAD2` `C57BL6J` (000664) `C57BL6N` (005304) `C57BL6J:C57BL6N` (#000664 & #005304) `CC037` (#025423) `CC041` (#021893) `CC013` (#021892) `CC006` (#022869) `CC002` (#021236) `CC017` (#022870) `B6JCC037`(#000664 & #025423) `B6JCC041`(#000664 & #021893) `B6JCC013`(#000664 & #021892) `B6JCC006`(#000664 & #022869) `B6JCC002`(#000664 & #021236) `B6JCC017`(#000664 & #02870) `LOAD1` (028709) `LOAD2` (030670)
`individualCommonGenotype`	Genotype of animal with LOAD-terminology LOAD1: APOE4_homozygous TREM2R47H_homozygous LOAD2: APOE4_homozygous TREM2R47H_homozygous ABETA_homozygous	`LOAD1` `LOAD2` `LOAD1.ABCA7A1527G` `LOAD1.CEACAM1KO` `LOAD1.Clasp2L163P` `LOAD1.CR1long` `LOAD1.Il1rapExon2KO` `LOAD1.MthfrC677T` `LOAD1.Plcg2M28L` `LOAD1.Snx1D465N` `Trem2R47H` `C57BL6J` `5XFAD` `APOE4`
`officialName`	Official JAX Mice strain nomenclature. Full name indicating all transgenes. https://mice.jax.org	`C57BL/6J` `B6(SJL)-Apoetm1.1(APOE*4)Adiuj Trem2em1Adiuj/J`
`modelSystemName`	Strain annotation	Values: https://www.synapse.org/#!Synapse:syn10242922/tables/query/eyJzcWwiOiJTRUxFQ1QgRElTVElOQ1QgIHZhbHVlIEZST00gc3luMTAyNDI5MjIgV0hFUkUgKCggXCJrZXlcIiA9ICdtb2RlbFN5c3RlbU5hbWUnICkgKSIsICJhZGRpdGlvbmFsRmlsdGVycyI6W10sICJpbmNsdWRlRW50aXR5RXRhZyI6dHJ1ZSwgIm9mZnNldCI6MCwgImxpbWl0IjoyNSwgInNvcnQiOltdfQ== Example: `3xTg-AD`
`stockNumber`	The JAX stock number (6-digit)	Example: `000664`