Following the analysis of survival and prediction by other clinical traits here. I used the same survival object to investigate if there are any genes that are predictive of survival. The processed data was obtained from Bin (my understanding that Justin normalized it by removing batch (exact procedure of normalization needs to be specified)).
Permutation test:
P value |
FDR, % |
Number of loci |
|---|---|---|
0.05 |
56.88 |
1048 |
0.01 |
45.23 |
264 |
0.005 |
42.99 |
144 |
0.001 |
32.62 |
48 |
So this doesn't look very convincing either. Need to do calculation for the progression free interval