Genotype Naming
Assay Naming
Line Naming
Mouse Naming
These are the variables describing the mice in the Individual Metadata file. The modelSystemName is used as file annotation. The AD Model Explorer uses the LOAD definition.
Variable | Definition | Example |
officialName | Full name indicating all transgenes, taken from the strain’s JAX datasheet | B6.Cg-Apoetm1.1(APOE*4)Adiuj Abca7em2Adiuj Trem2em1Adiuj/J |
modelSystemName | Strain annotation - see AMP-AD Metadata Dictionary. Used as file annotation | Abca7A1527GAPOE4Trem2R47H |
stockNumber | The JAX stock number | 030283 |
genotypeBackground | Background genotype | C57BL6J |
genotype | Genotype of animal that indicates littermate carriers vs noncarriers | APOE4_homozygous; TREM2R47H_homozygous; ABCA7KI_NONCARRIER APOE4_homozygous; TREM2R47H_homozygous; ABCA7KI_HOMOZYGOUS |
individualCommonGenotype | Genotype of animal that includes LOAD1 or LOAD2 terminology. This is the model name used in the AD Model Explorer LOAD1= APOE4_HOMOZYGOUS; TREM2R47H_HOMOZYGOUS. LOAD2=APOE4_HOMOZYGOUS; TREM2R47H_HOMOZYGOUS; ABETA_HOMOZYGOUS | LOAD1 LOAD1.ABCA7A1527 |
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