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These variables describe the mice in the Individual Metadata file.
Variable | Definition | Example |
genotype
| Genotype of animal that indicates littermate carriers vs noncarriers. Format based on Climb variables: <gene>-<allele>_<genotype_symbol> Complete list of genotype values | APOE4-KI_heterozygous
APOE4-KI_homozygous
APOE4-KI_WT
3xTg-AD_carrier
3xTg-AD_noncarrier
|
officialName
| Full name indicating all transgenes, taken from the strain’s JAX datasheet | |
modelSystemName
| Strain annotation - see AMP-AD Metadata Dictionary. Used as file annotation | Abca7A1527GAPOE4Trem2R47H
See data query |
stockNumber
| The JAX stock number | 030283
|
genotypeBackground
| Background genotype | C57BL6J
|
| | |
individualCommonGenotype
| Genotype of animal with LOAD terminology (used by MODEL-AD Explorer) LOAD1: APOE4_homozygous TREM2R47H_homozygous
LOAD2: APOE4_homozygous TREM2R47H_homozygous ABETA_homozygous
| 5XFAD APOE4 C57BL6J LOAD1 LOAD1.ABCA7A1527G LOAD1.CEACAM1KO LOAD1.CR1long LOAD1.Clasp2L163P LOAD1.Il1rapExon2KO LOAD1.MthfrC677T LOAD1.Plcg2M28L LOAD1.Snx1D465N LOAD2 Trem2R47H
|
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