Are you ready Ready to contribute data to the AD Knowledge Portal?
Request a service through Contact the https://sagebionetworks.jira.com/servicedesk/customer/portal/12
Send a request to the AD + EL Service Desk to help add data or generate a publication dataset with a DOI.Include
MODEL-AD
in the subject lineYou will need the following information:
Grant Number
Contact PI
In order to configure the study in Synapse, please provide information about the following
Study Name (see naming conventions below)
Assay performed
Data FormatAssays performed (see list of AD Metadata Dictionary)
Data type
File format
Quantity of files, individual, and specimens
...
MODEL-AD study names should be formatted as follows.
Study type | Naming Format | Number of Strains |
Primary Screen |
| Many |
Strain Validation |
| Many |
Deep Phenotyping |
| Many |
Pharmacokinetic |
| One |
Pilot Studies
|
Examples:
| Many |
Contributing Data Files to Synapse
Information about uploading and organizing data
Study Organization
File Structure
Studies are organized in Synapse with a directory schema similar to Study directories will be organized like this:
DataStudy_Name/
/
Assay_a/
Assay_b/
Metadata/
Staging/
(Note: Files will initially be uploaded to staging locations)Assay_*/
private access)
File naming
File names should be concise, descriptive, and unique across the entire study. We must be able to distinguish between each file as if there were all in one directorymust be unique and machine readable. Names can not include special characters. Furthermore, we recommend the names be concise and descriptive.
See general file naming recommendations from the Princeton U Library.
...
MODEL-AD specific templates are being drafted and will be made available on Synapse (see Study, Acknowledgment, and Methods). Each study should be accompanied by needs a brief study description that includes the species, genetic background, a link to the Jax Datasheet (if available) or a description of how the animals were created.
...
Methods Description
Each assay should include a brief description of the procedures, data collection, and analytical methods. This is a good opportunity to provide useful details that may not be included in the manuscript.
...