Some of these fields have Synapse annotations defined: https://github.com/Sage-Bionetworks/synapseAnnotations/blob/master/synapseAnnotations/data/tool.json
| Field Name | Description | Synonyms | Column Type | Facet (Y/N) | Required (Y/N) | Destination | Notes | Applies to Which Tool Type |
|---|
| toolName |
| name, methodName | string | N | Y | link | name is a clickable link, URL sourced from "link" column | computational, experimental, clinical |
| description |
| summary | large text | N | Y |
|
| computational, experimental, clinical |
| link | link to access the tool | link | URL | N | Y |
should the full URL be used?
|
| computational, experimental, clinical |
| consortium | Key for mapping | organization, program, fundingAgency | string | Y | N |
|
| computational, experimental, clinical |
| grant | Key for mapping | project | string | Y | N |
|
| computational, experimental, clinical |
| study | Key for mapping |
| string | Y | N |
|
| computational, experimental, clinical |
| contributor | contributor name | contact | string | N | N |
|
| computational, experimental, clinical |
| contributorContact | synID or email address |
| entity? email? | N | N |
type |
|
| computational, experimental, clinical |
| toolType | e.g. bench science/experimental, computational, or clinical |
| string | Y | N |
| also associated with different icons? | computational, experimental, clinical |
| subType | mouse model, cell line, R shiny tool, etc |
| string | Y | N |
can these be condensedexperimentalType
|
| reagentType | mouse model, cell line, viral vector |
| string | Y | N |
can these be condensed?
|
| experimental |
| softwareType | type of Software, e.g. script, packageLibrary, container, graphical user interface, web user interface, web application |
| string | Y | N |
can these be condensed?
|
| computational |
| softwareLanguage | software language e.g. R, python, matlab |
| string | Y | N |
|
| computational |
| inputDataType | source data for tool e.g. geneExpression, proteomics |
| string | Y | N |
|
| computational |
| outputDataType | output data of tool e.g. genomicVariants, image, proteomics |
| string | Y | N |
|
| computational |
| diagnosis | e.g. Late onset AD, Familial AD | tumor type | string | Y | N |
|
| computational, experimental, clinical |
| modelType | e.g. APP mouse model, Trem2 model |
| string | Y | N |
|
| experimental |
| outputDatasets | datasets generated using this tool or about this tool |
| entity | N | N |
| is this data using the tool or about the tool? ie rnaseq data from a workflow tool vs rnaseq data ON a mouse model | computational, experimental, clinical |
| publications | list of publications? |
| large text | N | N |
| what is the expected display and behavior? | computational, experimental, clinical |
| controlledAccess |
|
| boolean | N | N |
|
| computational, experimental, clinical |
| documentation | link to wiki or PDF containing documentation, possibly in Synapse |
| URL | N | N |
|
| computational, experimental, clinical |
| featured |
|
| boolean | N | N |
|
| computational, experimental, clinical |
