Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
>ssh fremont
>cd /work/platform/DatasetMetadataLoader
/work/platform/DatasetMetadataLoader> curl http://charon-vpn-010162.fhcrc.org:8080/repo/v1/dataset
{"results":[],"totalNumberOfResults":0,"paging":{}}
/work/platform/DatasetMetadataLoader> ./datasetCsv2Loader.py TheDatasets2.csv charon-vpn-010162.fhcrc.org:8080 AllDatasetLayerLocations.csv
lot of output here . . .
/work/platform/DatasetMetadataLoader> curl http://charon-vpn-010162.fhcrc.org:8080/repo/v1/dataset?limit=1
{
   "results":[
      {
         "name":"Gastric Cancer ACRG",
         "annotations":"/repo/v1/dataset/0/annotations",
         "id":"0",
         "version":"0.0.1",
         "creator":"Asian Cancer Research Group, Inc., (ACRG)",
         "description":null,
         "creationDate":1299375144172,
         "status":"Future",
         "uri":"/repo/v1/dataset/0",
         "etag":"384011750",
         "releaseDate":null,
         "layer":"/repo/v1/dataset/0/layer",
         "hasExpressionData":false,
         "hasGeneticData":false,
         "hasClinicalData":false
      }
   ],
   "totalNumberOfResults":114,
   "paging":{
      "next":"/repo/v1/dataset?offset=2&limit=1"
   }
}

How to save money on the AWS bill

If you use EBS-backed AMIs you can "stop" (not "terminate") your instance when you are not using it. Your root partition and other EBS volumes stick around and you are only charged for EBS usage while the instance is "stopped". When you need to use it again you "start" the instance and then re-start your applications.

You can also start with a less expensive instance type easily upgrade to a larger size in this same manner. One thing to note is that you cannot switch between 32bit to 64bit OS - choose well for your initial choice.

Image Added

Notes for the sake of posterity

...