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Beta (vertical) vs M value (-batch, center, plate column and row (BCRC)) (horizontal):

Wiki Markup
{csv}Modules,grey,turquoise,blue,brown,yellow,black,pink,magenta,red,purple,greenyellow,tan,green,salmon,midnightblue,cyan,lightcyan,grey60,lightgreen
grey,20981,2126,1039,60,227,108,97,92,89,89,86,85,82,46,42,4,34,33,32
turquoise,787,19,0,552,0,0,0,0,24,0,0,0,0,0,1,39,0,0,0
blue,255,0,8,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
brown,1,0,0,0,242,0,0,0,0,0,0,0,0,0,0,0,0,0,0
yellow,0,0,159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
green,0,0,0,0,0,0,0,0,0,0,0,0,39,0,0,0,0,0,0
black,32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
pink,30,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
red,29,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0{csv}

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M value (BCRC) vs M value (Center): Wiki Markup{csv}"Modules","grey","turquoise","blue","brown","yellow","green","red","black","pink" "grey",22104,2,1,0,3,3,0,2,0 "turquoise",389,1746,16,0,0,0,0,0,0 "blue",283,2,921,0,0,0,0,0,0 "brown",459,0,0,0,156,0,0,0,0 "yellow",61,0,0,408,0,0,0,0,0 "black",108,0,0,0,0,0,0,0,0 "magenta",92,0,0,0,0,0,0,0,0 "tan",85,0,0,0,0,0,0,0,0 "greenyellow",85,0,0,0,0,0,0,1,0 "green",38,0,0,0,0,83,0,0,0 "red",68,0,0,0,0,0,45,0,0 "pink",59,0,0,0,0,0,0,38,0 "purple",40,0,0,0,0,49,0,0,0 "salmon",46,0,0,0,0,0,0,0,0 "cyan",43,0,0,0,0,0,0,0,0 "midnightblue",9,0,0,0,0,0,0,0,34 "lightcyan",34,0,0,0,0,0,0,0,0 "grey60",33,0,0,0,0,0,0,0,0 "lightgreen",32,0,0,0,0,0,0,0,0 {csv}

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traits

Beta

M value (BCRC)

M value (BCR)

mb

mbc

% variance explained

60-73%

45-80%

45-80%

15-60%

15-66%

number of modules

8

18

8

65

79

survival (P value=0.05)

0

0

0 (red=0.0509)

6

8

primary therapy outcome

0

0

1 (red)

 

 

age

1

6

1

 

 

tumor grade

1

1

0

 

 

tumor stage

0

0

0

 

 

Tumor residual disease

0

1

1

 

 

Chromosomal clustering

2

4

1 (brown)

27

52

Gene Ontology

keratinization

keratinization

keratinization

weak

weak

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