Data Templates and Transfer

MODEL-AD Data Templates

Explore all Data Templates

	Assay	Data Template
1	Behavioral Process	Frailty Open Field Rotarod Spontaneous alternation Wheel running
2	Gene Expression	template_assay_nanostring.xlsx Raw files and processed files template_assay_RNAseq.xlsx FASTQ files
3	Immunoassay	data_template_proinflammatory_molecular_data.xlsx data_template_abeta_molecular_data.xlsx data_template_immunofluorescence.xlsx data_template_abeta_molecular_data.xlsx data_template_pathology.xlsx
4	Long-term Potentiation	LTPIOCurve LTPPPF LTPSlopeExp
5	Imaging	Autoradiography MRI PET
6	Pharmacokinetic Study	Template in Development Each set should be in a CSV file Values and units should not be in separate columns

MODEL-AD Data Collection across Sites

	JAX	IU		PITT	UCI
	DMP	DMP	PTC	PTC	DMP
Behavior Process
Clinical - Blood chemistry measurement
Electrophysiology - LTP
Gene expression - mRNA counts (Nanostring)
Gene expression - RNAseq
Imaging - Autorad
Imaging - MRI
Imaging - PET
Immunoassay - electrochemiluminescence
Immunoassay - immunofluorescence
Immunoassay - Western blot
Pharmacokinetic study

Data Transfer

This section describes how MODEL-AD teams should contribute data to the DCC. In our onboarding call, we will review how MODEL-AD content is organized in the portal. It is important we all understand clearly what content will be transferred (data type, file format, file naming, number of files).

Let us know about your next planned data contribution: https://forms.gle/YJaPuEumYRnwm8916

The Curator will create the Synapse directory structure that is appropriate for the data types including a private staging directory for data uploads. The SynapseIDs for the staging directories will be provided.