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Datasets availability as for December 13th, 2011 

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Cancer,Code,Methylation,Expression,miRNA,Sequence
Acute Myeloid Leukemia,AML,193/0/0,0/0/0,0/0/0,200/200/0
Bladder Urothenial Carcinoma,BLCA,38/11/0,0/0/0,0/0/0,38/40/0
Brain Lower Grade Glioma,LGG,24/2/0,27/0/0/,0/0/0,80/80/0
Breast Invasive Carcinoma, BRCA,816/117/8,536/62/2,0/0/0,807/834/28
Cervical squamous cell carcinoma,CESC,0/0/0,0/0/0,0/0/0,37/37/2
Colon adenocarcinoma,COAD,166/37/3,154/12/9,0/0/0,421/474/19
Glioblastoma multiforme,GBM,541/0/1,572/0/11,492/0/,580/515/28
Head and neck squamous cell carcinoma,HNSC,0/0/0,0/0/0,0/0/0,170/191/6
Kidney renal cell carcinoma,KIRC,391/346/6,72/0/1,0/0/0,494/504/11
Kidney renal papillary cell carcinoma,KIRP,16/5/1,16/0/0/,0/0/0,43/46/0
Liver hepatocellular carcinoma,LIHC,0/0/0,0/0/0,0/0/0,55/69/1
Lung adenocarcinoma,LUAD,127/24/1,32/0/1,0/0/0,205/234/2
Lung squamous cell carcinoma,LUSC,228/67/3,154/0/1,0/0/0, 229/246/23
Lymphoid neoplasm diffuse large B-cell Lymphoma,DLBC,0/0/0,0/0/0,0/0/0,0/0/0
Lymphoid neoplasm Non-Hodkins Lymphoma,LNNH, 0/0/0,0/0/0,0/0/0,0/0/0
Ovarian serous adenocarcinoma,OV,573/4/9,589/0/9,586/0/8,590/574/30
Pancreatic adenocarcinoma,PAAD,0/0/0,0/0/0,0/0/0,14/14/14
Prostate adenocarcinoma,PRAD,0/0/0,0/0/0,0/0/0,83/96/1
Rectum adenocarcinoma,READ,69/5/3,69/3/2,0/0/0,165/170/4
Skin cutateneous melanoma,SKCM,0/0/0,0/0/0,0/0/0,0/0/0
Stomach adenocarcinoma,STAD,118/45/1/,0/0/0,0/0/0,135/148/2
Thyroid carcinoma,THCA,0/0/0,0/0/0,0/0/0,86/96/1
Uterine corpus endometrioid carcinoma,UCEC,373/16/12,54/0/0,0/0/0,371/376/14

DNA methylation data availability for 27k and 450k arrays for the selected cancer types:

Unknown macro: {csv}

Cancer Type,Code,Methylation/# patients,27k,450 k Level 1 type,450 k Level 1 # tumors,450 k Level 2 # tumors,Number of batches,Barcode # batches
Acute Myeloid Leukemia,LAML,193/0/0,188,txt (GenomeStudio export),190,didn't download,2,3
Breast Invasive Carcinoma,BRCA,816/117/8,26,idat (bead level),didn't download,91,,24
COLON (COAD+READ),butt,166/37/3,237,not available,not available,not available,,9
Glioblastoma Multiforme,GBM,541/0/1,294,txt (GenomeStudio export),74,didn't download,19,19
Kidney Renal Cell Carcinoma,KIRC,391/346/6,219,idat (bead level),didn't download,173,12,16
Lung Adenocarcinoma,LUAD,127/24/1,32,not available,not available,not available,11,8
Lung Squamous Cell Carcinoma,LUSC,228/67/3,134,idat (bead level),didn't download,95,11,12
Stomach Adenocarcinoma,STAD,118/45/1,66,idat (bead level),didn't download,52,6,6
Uterine Corpus Endometrioid Carcinoma,UCEC,373/16/12,117,idat (bead level),didn't download,256,19,6

 

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