Skip to end of banner
Go to start of banner

How to install the Synapse R Client

Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 12 Next »

Installation:

  1. If needed, install R from http://cran.r-project.org/
  2. From the R command prompt, install the following packages:

    source('http://depot.sagebase.org/CRAN.R')
    pkgInstall("synapseClient")
    

    At a later date, we anticipate that this package will be available via Bioconductor or CRAN

Supported Platforms:

  • Windows
  • Mac OSX
  • Any Linux/Unix platform will use the source of the package and compile/install as-needed

Common Installation Problems

RCurl package cannot be installed

If you see an error like:

  • installing source package ‘RCurl’ ...
    • package ‘RCurl’ correctement décompressé et sommes MD5 vérifiées
      checking for curl-config... no
      Cannot find curl-config
      ERROR: configuration failed for package ‘RCurl’

then there are missing dependencies for the RCurl package, upon which the Synapse R client depends.  For information on resolving these missing dependencies, please see: http://www.omegahat.org/RCurl/FAQ.html

  • No labels