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Results for PARC data set, treated samples (18K probes and 480 samples)
Sage Coexpression, organic correlation algorithm |
Sage Coexpression, WGCNA correlation algorithm |
WGCNA Coexpression |
Unix space: 76.0 GB |
Unix space: 83.5 GB
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Unix space: 51.6 GB
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Unix time: 4:52:21 |
Unix time: 4:07:34 |
Unix time: 1:38:55 |
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(file lost due to I/O error)
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Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):
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30.9%
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Module co-membership comparison (vs. this column as a baseline):
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grey turquoise blue red green brown yellow black magenta purple pink greenyellow tan salmon cyan
0 12115 0 0 0 0 0 0 0 0 0 0 0 0 0 0
1 725 0 23 0 182 0 0 109 0 0 0 0 0 0 0
2 524 1 392 1 0 0 0 0 0 0 0 0 0 0 0
3 346 412 10 0 0 0 0 0 0 0 0 0 0 0 0
5 364 137 0 0 0 0 119 0 0 0 0 0 0 0 0
4 353 0 1 205 77 0 0 0 0 0 0 0 0 0 0
6 287 1 0 0 0 163 0 0 0 0 0 0 0 0 0
7 186 0 0 0 0 156 0 0 0 0 0 0 0 0 0
9 138 0 0 0 0 0 0 0 0 0 0 0 34 0 0
8 138 0 0 0 0 0 0 0 82 0 0 0 0 0 0
10 94 0 0 0 0 0 0 0 0 0 49 0 0 0 0
12 83 0 0 0 0 0 0 0 0 0 0 45 0 0 0
11 55 0 0 0 0 0 78 0 0 0 0 0 0 0 0
13 76 0 0 0 0 0 0 0 0 0 37 0 0 0 0
18 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 47 0 0 0 0 0 0 0 0 53 0 0 0 0 0
16 29 0 0 0 0 0 52 0 0 0 0 0 0 0 0
15 49 0 0 0 0 0 0 0 0 0 0 0 0 0 32
17 30 0 39 0 0 0 1 0 0 0 0 0 0 0 0
19 23 0 0 0 0 0 36 0 0 0 0 0 0 0 0
21 20 0 0 0 0 0 0 0 0 0 0 0 0 34 0
22 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 |
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<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.
WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>
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