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Results for PARC data set, control samples  (18K probes and 480 samples)

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Unix space:  75.8

Unix space: 83.8 GB

Unix space: 46.8 GB

Unix time:  4:53:15

Unix time: 4:05:44

Unix time: 1:32:55




Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):

 

25.2%

Module co-membership comparison (vs. this column as a baseline):

 

grey blue turquoise brown yellow green red black pink
  0  13941    0         0     0      0     0   0     0    0
  1    558    0       112   133      0     0   0     0    0
  2    524    4         0   204      0     0   0     0    0
  3    308  258         0     1      0     0   0     0    0
  4    300   38        85     0      0    35   0     0    0
  5    116    0       242     0      0     0   0     0    0
  6    194    0         7     2    135     0   0     0    0
  8    173    0         0     0      0     0  70     0    0
  7    138    0         0     0      0   118   0     0    0
  9    133    0         0     0      0     0   0     0   38
  10    66    0         0     0     80     0   0     0    0
  11    58   72         1     0      0     0   0     0    0
  13    60    0         0     0      0     0   0     0    0
  12    58    0         0     0      0     0   0    46    0
  14    52    0         0     0      0     0   0     0    0
  15    31    0         0     0      0     0   0     0    0


<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.


WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>


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