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Results for PARC data set, all samples  (18K probes and 960 samples)

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Unix space:  83.9 GB

Unix space:80.7 GB

Unix space: 51.6 GB

Unix time:  5h:55m:16s

Unix time: 4h:22m:56s

Unix time: 1h:38m:55s


(data lost due to I/O error)


Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):

 

20.9%

Module co-membership comparison (vs. this column as a baseline):

 

grey brown turquoise yellow blue green red black pink magenta purple greenyellow
  0  14931     0         0      0    0     0   0     0    0       0      0           0
  1    694     0        77      0  113     1   0   102    0       0      0           0
  2    374     0         0      0   79     0 103     1    0       0      0           0
  3    296     0       175      0    0     0   0     0    0       0      0           0
  4    169   194         0      0    0     0   0     0    0       0      0           0
  5    178     0         0    118    0     0   0     0    0       0      0           0
  6    127     0         0      0    5   108   0     0    0       0      0           0
  7    105     0         0      0    0     0   0     0    0       0     44           0
  9     71     0         0      0    0     0   0     0    0       0      0           0
  11    66     0         0      0    0     0   0     0    0       0      0           0
  8     40     0         0      0    0     0   0     0   52       0      0           0
  12    51     0         0      0    0     0   0     0    0       0      0           0
  10    23     0         0      0    0     0   0     0    0      46      0           0
  13    12     0         0      0    0     0   0     0    0       0      0          36


<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.


WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>


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