Data Templates
Each template should also include a Data Dictionary with a list of each key-definition pair. Each data template should have a brief Assay description (3-5 sentences) about data collection.
See all the available data templates
MODEL-AD Data Templates
Assay | Data Template | data dict |
|---|---|---|
Behavioral – Frailty | ||
Behavioral – Open field | ||
Behavioral – Rotarod | ||
Behavioral – Spontaneous Alternation | ||
Behavioral – Wheel running | ||
Gene Expression – mRNA counts (Nanostring) | Provide raw files and processed files |
|
Gene Expression – RNAseq | Provide FASTQ files and counts. Do not include BAM files. |
|
Clinical – Blood chemistry measurement | ||
Immunoassay – Electrochemiluminescence | ||
Immunoassay – Immunofluorescence | ||
Electrophysiology – LTP | ||
Imaging – Autorad |
| |
Imaging – MRI |
| |
Imaging – PET |
| |
Pharmacokinetic Study |
|
MODEL-AD Data Collection across Sites
JAX | IU | PITT | UCI | ||
DMP | DMP | PTC | PTC | DMP | |
Data Transfer
This section describes how MODEL-AD teams should contribute data to the DCC. In our onboarding call, we will review how MODEL-AD content is organized in the portal. It is important we all understand clearly what content will be transferred (data type, file format, file naming, number of files).
Let us know about your next planned data contribution: https://forms.gle/YJaPuEumYRnwm8916
The Curator will create the Synapse directory structure that is appropriate for the data types including a private staging directory for data uploads. The SynapseIDs for the staging directories will be provided.
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