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How to install the Synapse R Client

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Installation:

  1. If needed, install R from http://cran.r-project.org/
  2. From the R command prompt, install the following packages:
    source('http://sage.fhcrc.org/CRAN.R')
    pkgInstall(c("synapseClient"))
    
    At a later date, we anticipate that this package will be available via Bioconductor or CRAN
  3. NOTE: If you are running OSX, you will need to install tcl/tk for all of the client features to work properly. You can find the installer here: http://cran.r-project.org/bin/macosx/tools/tcltk-8.5.5-x11.dmg
  4. If anything goes wrong see Troubleshooting Installation Problems

Optional:

  • We recommend installing RStudio It is an integrated development environment for writing and running R code.
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Supported Platforms:

  • Windows 32bit
  • Windows 64bit
  • Mac OSX Snow Leopard 10.6
  • Mac OSX Lion Lion 10.7
  • Any Linux/Unix platform will use the source of the package and compile/install as-needed
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