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Batch vs clinical traits

Number of clinical traits: 57, number of theoretical DNA methylation batches: 20

Correlation of batch with the center

> table(batchID, center)
       center
batchID A5 AJ AP AW AX B5 BG BK BS D1 DF DI E6 EC EO EY FI H5
   A00U  0  0  9  0 13  0  0  2  0  0  0  0  0  0  0  0  0  0
   A039 18  0 13  0  2  7  6  0  0  0  0  0  0  0  0  0  0  0
   A105  7  0  4  0  1  7 13  1 14  0  0  0  0  0  0  0  0  0
   A10A  1  0  0  0  1  0  3  0  3  0  0  0  0  0  0  0  0  0
   A10N  0  0  0  0  1  7  3  0  1  8  0  0  0  0  0  0  0  0
   A10Q  7  0  4  0  1  7 13  1 14  0  0  0  0  0  0  0  0  0
   A123  4  0  4  0  4 13  4  3  4 11  0  0  0  0  0  0  0  0
   A12K  0  0  0  0  0  0  5  0  1 40  0  1  0  0  0  0  0  0
   A138  0  0 12  0 15  0  0  0  0  0  0  3  0  0  0  0  0  0
   A13K  0  0  0  0  0  2  0  0  0  0  0  0  0  0  0 20  0  0
   A145  0  0  0  0  0  4  0  0  0  0  0  0  2  0  0  1  0  0
   A14H  3  0  1  0  0  5  0  0  2  6  0  0  1  1  0  2  0  0
   A14N  1  0  0  0  0  2  0  0  0  1  0  0  0  0  0  2  0  0
   A161  0  2  0  1  0  0  3  0  0  0  0  1  0  0  3  2  0  0
   A16G  0  0  0  0  0  0  2  1  0  2  0  1  0  2  0  0  0  0
   A17F  0  0  0  0  9  1  1  0  0  4  0  0  0  0  0  0 13  0
   A17H  0  0  0  0  1  0  0  0  0  0  0  0  0  0  0  0  0  0
   A17Z  3  0  0  0  3  0  0  0  0  1  5  0  0  0  5  0  0  1
   A18O  2  5  0  0  3  0  1  0  0  0  1  1  0  0  3  2  1  0
   A19Z  0  6  0  0  0  4  1  0  0  2  0  2  2  0  7  3  0  0

Correlation with clinical traits (complete table is here) 

Unknown macro: {csv}

UCEC,DataType,NumberOfNAs,Test,Pvalue
histological_type,factor,69,Pearson's Chi-squared test,9.48E-27
year_of_initial_pathologic_diagnosis,integer,68,Kruskal-Wallis rank sum test,1.18E-17
days_to_form_completion,integer,68,Kruskal-Wallis rank sum test,3.78E-15
prosp_tissue_coll,factor,68,Pearson's Chi-squared test,9.22E-15
retro_tissue_coll,factor,68,Pearson's Chi-squared test,6.46E-14
tumor_grade,factor,73,Pearson's Chi-squared test,9.17E-11
days_to_last_followup,integer,84,Kruskal-Wallis rank sum test,1.15E-10
surgical_approach,factor,72,Pearson's Chi-squared test,5.31E-04
followup_met_assessment_outcome_success_margin_status,factor,126,Pearson's Chi-squared test,1.07E-03
total_pelv_lnr,integer,80,Kruskal-Wallis rank sum test,1.21E-03
first_pathologic_diagnosis_biospecimen_acquisition_method_type,factor,70,Pearson's Chi-squared test,1.53E-03
peritoneal_wash,factor,85,Pearson's Chi-squared test,1.11E-02
vital_status,factor,68,Pearson's Chi-squared test,2.98E-02
days_to_birth,integer,68,Kruskal-Wallis rank sum test,6.14E-02
age_at_initial_pathologic_diagnosis,integer,68,Kruskal-Wallis rank sum test,6.22E-02
person_neoplasm_cancer_status,factor,97,Pearson's Chi-squared test,6.44E-02
total_aor.lnp,integer,137,Kruskal-Wallis rank sum test,6.49E-02
total_aor_lnr,integer,83,Kruskal-Wallis rank sum test,8.01E-02
weight,integer,72,Kruskal-Wallis rank sum test,8.12E-02

Batch vs survival
DNA methylation
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