Versions Compared

Old Version 21

changes.mady.by.user Nicole Deflaux

Saved on

compared with

New Version 22

changes.mady.by.user Nicole Deflaux

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [
    {
      "Disease": ["Cancer"],
      "Institution": ["Asian Cancer Research Group, Inc., (ACRG)"],
      "Internal Name": ["ACRG_gastric"],
      "Number of Samples": [2000],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Stomach"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/gastric_cancer_acrg.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/gastric_cancer_acrg.txt"],
      "creationDate": 12984282241011298504485243,
      "creator": "Asian Cancer Research Group, Inc., (ACRG)",
      "db_id": [1],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GGQMag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GAEM",
      "name": "Gastric Cancer ACRG",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/gastric_cancer_acrg.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/gastric_cancer_acrg.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Cancer"],
      "Institution": ["Asian Cancer Research Group, Inc., (ACRG)"],
      "Internal Name": ["ACRG_lung"],
      "Number of Samples": [2000],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Lung"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/lung_cancer_acrg.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/lung_cancer_acrg.txt"],
      "creationDate": 12984282253591298504486356,
      "creator": "Asian Cancer Research Group, Inc., (ACRG)",
      "db_id": [2],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GHsMag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GBgM",
      "name": "Lung Cancer ACRG",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/lung_cancer_acrg.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/lung_cancer_acrg.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Cancer"],
      "Institution": ["Fred Hutchinson Cancer Research Center /SKCCC at Johns Hopkins"],
      "Internal Name": ["AML-Ped_TARGET"],
      "Number of Samples": [200],
      "Posting Restriction": ["Link to data source"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Blood"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/pediatric_aml_target.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/pediatric_aml_target.txt"],
      "creationDate": 12984282259951298504487033,
      "creator": "Soheil Meshinchi/ Bob Arceci",
      "db_id": [3],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GI4BDAag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GCsM",
      "name": "Pediatric AML TARGET",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/pediatric_aml_target.txt"],
      "releaseDate": null,
      "status": "Pending",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/pediatric_aml_target.txt"],
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 114
}

...

Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [
    {
      "Disease": ["Cancer"],
      "Institution": ["Sage Bionetworks"],
      "Internal Name": ["Nonresponders_AML"],
      "Number of Samples": [300],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Blood"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/aml_nonresponders_cohort.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/aml_nonresponders_cohort.txt"],
      "creationDate": 12984282573671298504512800,
      "creator": "Stephen Friend",
      "db_id": [74],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GIMMDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GKALDA",
      "name": "AML Nonresponders Cohort",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/aml_nonresponders_cohort.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/aml_nonresponders_cohort.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Cancer"],
      "Institution": ["TCGA"],
      "Internal Name": ["TCGA_AML"],
      "Number of Samples": [500],
      "Posting Restriction": ["Embargo"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Blood"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/aml_tcga.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/aml_tcga.txt"],
      "creationDate": 12984282657041298504519338,
      "creator": "TCGA",
      "db_id": [96],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GK8PDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMwODA",
      "name": "AML TCGA",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/aml_tcga.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/aml_tcga.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Asthma"],
      "Institution": ["Imperial College London"],
      "Internal Name": ["Cookson_LCLs"],
      "Number of Samples": [404],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Lymphoblastoid Cell Line"],
      "Type": ["Other"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/asthma_human_lymphoblastoid_cell_lines.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/asthma_human_lymphoblastoid_cell_lines.txt"],
      "creationDate": 12984282390251298504497227,
      "creator": "Cookson",
      "db_id": [25],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMgEDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GOUDDA",
      "name": "Asthma Human Lymphoblastoid Cell Lines",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/asthma_human_lymphoblastoid_cell_lines.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/asthma_human_lymphoblastoid_cell_lines.txt"],
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 114
}

...

Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [{
    "Disease": ["CVD"],
    "Institution": ["Vanderbilt University/ University of Pittsburg/ StJudes Hospital"],
    "Internal Name": ["Deliver"],
    "Number of Samples": [517],
    "Posting Restriction": ["Link to data source"],
    "Species": ["Human"],
    "Tissue/Tumor": ["Liver"],
    "Type": ["GCD"],
    "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/human_liver_cohort.txt"],
    "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/human_liver_cohort.txt"],
    "creationDate": 12984282408211298504498622,
    "creator": "Fred Guengrich/Steve Strom/ Erin Schuetz",
    "db_id": [29],
    "description": null,
    "hasClinicalData": true,
    "hasExpressionData": true,
    "hasGeneticData": true,
    "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA",
    "name": "Human Liver Cohort",
    "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/human_liver_cohort.txt"],
    "releaseDate": null,
    "status": "Current",
    "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/human_liver_cohort.txt"],
    "version": "0.0.1"
  }],
  "totalNumberOfResults": 114
}

...

Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [
    {
      "Disease": ["Cancer"],
      "Institution": ["Asian Cancer Research Group, Inc., (ACRG)"],
      "Internal Name": ["ACRG_gastric"],
      "Number of Samples": [2000],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Stomach"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/gastric_cancer_acrg.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/gastric_cancer_acrg.txt"],
      "creationDate": 12984282241011298504485243,
      "creator": "Asian Cancer Research Group, Inc., (ACRG)",
      "db_id": [1],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GGQMag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GAEM",
      "name": "Gastric Cancer ACRG",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/gastric_cancer_acrg.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/gastric_cancer_acrg.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Cancer"],
      "Institution": ["Asian Cancer Research Group, Inc., (ACRG)"],
      "Internal Name": ["ACRG_lung"],
      "Number of Samples": [2000],
      "Posting Restriction": ["unspecified"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Lung"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/lung_cancer_acrg.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/lung_cancer_acrg.txt"],
      "creationDate": 12984282253591298504486356,
      "creator": "Asian Cancer Research Group, Inc., (ACRG)",
      "db_id": [2],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GHsMag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GBgM",
      "name": "Lung Cancer ACRG",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/lung_cancer_acrg.txt"],
      "releaseDate": null,
      "status": "Future",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/lung_cancer_acrg.txt"],
      "version": "0.0.1"
    },
    {
      "Disease": ["Cancer"],
      "Institution": ["Fred Hutchinson Cancer Research Center /SKCCC at Johns Hopkins"],
      "Internal Name": ["AML-Ped_TARGET"],
      "Number of Samples": [200],
      "Posting Restriction": ["Link to data source"],
      "Species": ["Human"],
      "Tissue/Tumor": ["Blood"],
      "Type": ["GCD"],
      "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/pediatric_aml_target.txt"],
      "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/pediatric_aml_target.txt"],
      "creationDate": 12984282259951298504487033,
      "creator": "Soheil Meshinchi/ Bob Arceci",
      "db_id": [3],
      "description": null,
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GI4BDAag1kZWZsYXV4LXRlc3QychMLEg1HQUVKRE9EYXRhc2V0GCsM",
      "name": "Pediatric AML TARGET",
      "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/pediatric_aml_target.txt"],
      "releaseDate": null,
      "status": "Pending",
      "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/pediatric_aml_target.txt"],
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 114
}

...

Sanity check request
...
'Select *' Query for the Layers of a Dataset
Right now only a subset of query functionality is supported
 Code Block
SELECT * FROM layer WHERE dataset.id == <datasetId> [LIMIT <#>] [OFFSET <#>]
Request
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/test'query?query=select+*+from+layer+where+dataset.id+==+"ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA"'
Response
 Code Block

HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [
    {
      "creationDate": 1298504551273,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
      "name": "genetic data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "G",
      "version": "0.0.1"
    },
    {
      "creationDate": 1298504543884,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
      "name": "clinical data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "C",
      "version": "0.0.1"
    },
    {
      "creationDate": 1298504547984,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
      "name": "expression data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "E",
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 3
}
'Order By' Query for the Layers of a Dataset
Right now only a subset of query functionality is supported
 Code Block
SELECT * FROM layer WHERE dataset.id == <datasetId> ORDER BY "<field name>" [ASC|DESC] [LIMIT <#>] [OFFSET <#>]
Request
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/query?query=select+*+from+layer+where+dataset.id+==+"ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA"+ORDER+BY+"type"'
Response
 Code Block

HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "results": [
    {
      "creationDate": 1298504543884,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
      "name": "clinical data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "C",
      "version": "0.0.1"
    },
    {
      "creationDate": 1298504547984,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
      "name": "expression data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "E",
      "version": "0.0.1"
    },
    {
      "creationDate": 1298504551273,
      "description": "",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
      "name": "genetic data",
      "platform": null,
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "G",
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 3
}
REST API Examples (Read Only)
Sanity check request
This is just a 'hello world' type request that you can make to ensure that the service is running.
Request
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/test'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json; charset=UTF-8
Content-Language: en-US
Pragma: no-cache
Cache-Control: no-cache, no-store, max-age=0
Expires: Thu, 01 Jan 1970 00:00:00 GMT
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{"hello": "REST for Datasets rocks"}
...
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "paging": {"next": "/repo/v1/dataset?offset=4&limit=3&sort=name&ascending=true"},
  "results": [
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GIMMDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GKALDA/annotations",
      "creationDate": 12984282573671298504512800,
      "creator": "Stephen Friend",
      "description": null,
      "etag": "-2010080092877870406",
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GIMMDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GKALDA",
      "layer": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GIMMDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GKALDA/layer",
      "name": "AML Nonresponders Cohort",
      "releaseDate": null,
      "status": "Future",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GIMMDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GKALDA",
      "version": "0.0.1"
    },
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GK8PDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMwODA/annotations",
      "creationDate": 12984282657041298504519338,
      "creator": "TCGA",
      "description": null,
      "etag": "1652542921-558010455",
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GK8PDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMwODA",
      "layer": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GK8PDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMwODA/layer",
      "name": "AML TCGA",
      "releaseDate": null,
      "status": "Future",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GK8PDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMwODA",
      "version": "0.0.1"
    },
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMgEDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GOUDDA/annotations",
      "creationDate": 12984282390251298504497227,
      "creator": "Cookson",
      "description": null,
      "etag": "968203795-1821690516",
      "hasClinicalData": false,
      "hasExpressionData": false,
      "hasGeneticData": false,
      "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMgEDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GOUDDA",
      "layer": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMgEDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GOUDDA/layer",
      "name": "Asthma Human Lymphoblastoid Cell Lines",
      "releaseDate": null,
      "status": "Future",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GMgEDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GOUDDA",
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 114
}
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 18293559171398188117
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/annotations",
  "creationDate": 12984282408211298504498622,
  "creator": "Fred Guengrich/Steve Strom/ Erin Schuetz",
  "description": null,
  "etag": "18293559171398188117",
  "hasClinicalData": true,
  "hasExpressionData": true,
  "hasGeneticData": true,
  "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA",
  "layer": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer",
  "name": "Human Liver Cohort",
  "releaseDate": null,
  "status": "Current",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA",
  "version": "0.0.1"
}
Get Annotations for a Dataset
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/annotations'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 413002292
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "creationDate": null,
  "dateAnnotations": {},
  "doubleAnnotations": {},
  "etag": "413002292",
  "id": "ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA",
  "longAnnotations": {
    "Number of Samples": [517],
    "db_id": [29]
  },
  "stringAnnotations": {
    "Disease": ["CVD"],
    "Institution": ["Vanderbilt University/ University of Pittsburg/ StJudes Hospital"],
    "Internal Name": ["Deliver"],
    "Posting Restriction": ["Link to data source"],
    "Species": ["Human"],
    "Tissue/Tumor": ["Liver"],
    "Type": ["GCD"],
    "abstract_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/abstract_files/human_liver_cohort.txt"],
    "citation_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/citation_files/human_liver_cohort.txt"],
    "readme_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/readme_files/human_liver_cohort.txt"],
    "user_agreement_file_path": ["/srv/www/htdocs/Foswiki/downloads/data/v2/user_agreement_files/human_liver_cohort.txt"]
  },
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/annotations"
}
Get all the Layers for a Dataset
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "paging": {},
  "results": [
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/annotations",
      "creationDate": 12984282983931298504551273,
      "description": "",
      "etag": "-869197816198430025",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
      "locations": [
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsEBSLocationawsS3Location",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/locationssageLocation",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/sageLocationlocations",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsS3LocationawsEBSLocation"
      ],
      "name": "expressiongenetic data",
      "platform": null,
      "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/preview",
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "EG",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
      "version": "0.0.1"
    },
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/annotations",
      "creationDate": 12984283021691298504543884,
      "description": "",
      "etag": "-6479102651438392774",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
      "locations": [
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/sageLocationlocations",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsS3LocationsageLocation",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/locationsawsEBSLocation",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsEBSLocationawsS3Location"
      ],
      "name": "geneticclinical data",
      "platform": null,
      "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/preview",
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "GC",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
      "version": "0.0.1"
    },
    {
      "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/annotations",
      "creationDate": 12984282943191298504547984,
      "description": "",
      "etag": "-1124514053244259935",
      "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
      "locations": [
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsS3LocationawsEBSLocation",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/sageLocationlocations",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsEBSLocationsageLocation",
        "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/locationsawsS3Location"
      ],
      "name": "clinicalexpression data",
      "platform": null,
      "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/preview",
      "processingFacility": null,
      "publicationDate": null,
      "qcBy": null,
      "qcDate": null,
      "releaseNotes": "",
      "tissueType": null,
      "type": "CE",
      "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
      "version": "0.0.1"
    }
  ],
  "totalNumberOfResults": 3
}
Get a 
...
Genetic Dataset Layer
This returns the metadata for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: -869197816198430025
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/annotations",
  "creationDate": 12984282983931298504551273,
  "description": "",
  "etag": "-869197816198430025",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
  "locations": [
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsEBSLocationawsS3Location",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/locationssageLocation",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/sageLocationlocations",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsS3LocationawsEBSLocation"
  ],
  "name": "expressiongenetic data",
  "platform": null,
  "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/preview",
  "processingFacility": null,
  "publicationDate": null,
  "qcBy": null,
  "qcDate": null,
  "releaseNotes": "",
  "tissueType": null,
  "type": "EG",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
  "version": "0.0.1"
}
Get Annotations for a 
...
Genetic Dataset Layer
This returns the annotations for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/annotations'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 923521
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "creationDate": null,
  "dateAnnotations": {},
  "doubleAnnotations": {},
  "etag": "923521",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
  "longAnnotations": {},
  "stringAnnotations": {},
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/annotations"
}
Get preview data for a 
...
Genetic Dataset Layer
This returns the preview data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/preview'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 945969657246848728
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "etag": "945969657246848728",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA",
  "preview": "expressiongenetic data preview",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/preview"
}
Get the 
...
awsS3Location for a 
...
Genetic Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsEBSLocationawsS3Location'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "snap-29d33a42 (US West)https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298504777&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=%2FFKI%2FACW4orNh501tA92Fke9yK8%3D",
  "type": "awsebsawss3"
}
Get the sageLocation for a 
...
Genetic Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/sageLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "/Shares/external-data/DAT_030__human_liver_cohort",
  "type": "sage"
}
Get the 
...
awsEBSLocation for a 
...
Genetic Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMASDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGOcRDA/awsS3LocationawsEBSLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298432596&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=xR8BUedGbz4%2B6HkrDrYgbFSvhSs%3Dsnap_29d33a42 (US West)",
  "type": "awss3awsebs"
}
Get a 
...
Clinical Dataset Layer
This returns the metadata for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: -6479102651438392774
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/annotations",
  "creationDate": 12984283021691298504543884,
  "description": "",
  "etag": "-6479102651438392774",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
  "locations": [
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/sageLocationlocations",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsS3LocationsageLocation",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/locationsawsEBSLocation",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsEBSLocationawsS3Location"
  ],
  "name": "geneticclinical data",
  "platform": null,
  "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/preview",
  "processingFacility": null,
  "publicationDate": null,
  "qcBy": null,
  "qcDate": null,
  "releaseNotes": "",
  "tissueType": null,
  "type": "GC",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
  "version": "0.0.1"
}
Get Annotations for a 
...
Clinical Dataset Layer
This returns the annotations for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/annotations'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 923521
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "creationDate": null,
  "dateAnnotations": {},
  "doubleAnnotations": {},
  "etag": "923521",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
  "longAnnotations": {},
  "stringAnnotations": {},
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/annotations"
}
Get preview data for a 
...
Clinical Dataset Layer
This returns the preview data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/preview'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 246848728345556318
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "etag": "246848728345556318",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA",
  "preview": "geneticclinical data preview",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/preview"
}
Get the sageLocation for a 
...
Clinical Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/sageLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "/Shares/external-data/DAT_030__human_liver_cohort",
  "type": "sage"
}
Get the 
...
awsEBSLocation for a 
...
Clinical Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsS3LocationawsEBSLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298432597&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=AD1YAl08dBoKH2gIGbYB8FjZQoM%3Dsnap-29d33a42 (US West)",
  "type": "awss3awsebs"
}
Get the 
...
awsS3Location for a 
...
Clinical Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGMoSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGNMRDA/awsEBSLocationawsS3Location'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "snap_29d33a42 (US West)https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298504777&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=%2FFKI%2FACW4orNh501tA92Fke9yK8%3D",
  "type": "awsebsawss3"
}
Get a 
...
Expression Dataset Layer
This returns the metadata for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: -1124514053244259935
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "annotations": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/annotations",
  "creationDate": 12984282943191298504547984,
  "description": "",
  "etag": "-1124514053244259935",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
  "locations": [
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsS3LocationawsEBSLocation",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/sageLocationlocations",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsEBSLocationsageLocation",
    "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/locationsawsS3Location"
  ],
  "name": "clinicalexpression data",
  "platform": null,
  "preview": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/preview",
  "processingFacility": null,
  "publicationDate": null,
  "qcBy": null,
  "qcDate": null,
  "releaseNotes": "",
  "tissueType": null,
  "type": "CE",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
  "version": "0.0.1"
}
Get Annotations for a 
...
Expression Dataset Layer
This returns the annotations for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/annotations'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 923521
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "creationDate": null,
  "dateAnnotations": {},
  "doubleAnnotations": {},
  "etag": "923521",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
  "longAnnotations": {},
  "stringAnnotations": {},
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/annotations"
}
Get preview data for a 
...
Expression Dataset Layer
This returns the preview data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/preview'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
ETag: 345556318945969657
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "etag": "345556318945969657",
  "id": "ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA",
  "preview": "clinicalexpression data preview",
  "uri": "/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/preview"
}
Get the 
...
awsEBSLocation for a 
...
Expression Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsS3LocationawsEBSLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298432597&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=AD1YAl08dBoKH2gIGbYB8FjZQoM%3Dsnap-29d33a42 (US West)",
  "type": "awss3awsebs"
}
Get the sageLocation for a 
...
Expression Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/sageLocation'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "/Shares/external-data/DAT_030__human_liver_cohort",
  "type": "sage"
}
Get the 
...
awsS3Location for a 
...
Expression Dataset Layer
This returns the location data for a dataset layer.
...
 Code Block
curl -i -H Accept:application/json 'http://localhost:8080/repo/v1/dataset/ag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GJcFDAag1kZWZsYXV4LXRlc3QychQLEg1HQUVKRE9EYXRhc2V0GLQEDA/layer/ag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GJcFDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGLYSDAag1kZWZsYXV4LXRlc3Qyci8LEg1HQUVKRE9EYXRhc2V0GLQEDAsSFEdBRUpET0lucHV0RGF0YUxheWVyGN0RDA/awsEBSLocationawsS3Location'
Response
 Code Block
HTTP/1.1 200 OK
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
  "path": "snap-29d33a42 (US West)https://data01.sagebase.org.s3.amazonaws.com/human_liver_cohort.tar.gz?Expires=1298504778&AWSAccessKeyId=thisIsAFakeAccessKey&Signature=2SNmcWZg87P%2BMzW60EiWVYDlSSo%3D",
  "type": "awsebsawss3"
}
REST API Usage Examples (Read/Write and slightly out of date)
...