Versions Compared

Old Version 8

changes.mady.by.user Brian White

Saved on

compared with

New Version Current

changes.mady.by.user James Eddy

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Source data 

Synapse Table: https://www.synapse.org/#!Synapse:syn21868591/tables/

DEPRECATED Synapse File View: https://www.synapse.org/#!Synapse:syn18488466/tables/   

NOTE: Studies are selected in this view with is.dataset == TRUE 

DEPRECATED Synapse Table: https://www.synapse.org/#!Synapse:syn21517423/tables/

...

Explore page config

Type / name of card: "Datasets"

Number of Secondary Fields to show: 4

Note that there is no explicit aliasing between Column Name and Display Name. Rather, camelCase Column Names are automatically rendered as Camel Case. The table below just makes that clear.

Facets should be ordered in the order they appear in this table.

Any column that should be faceted in the portal (i.e., faceted on an explore page or have a column facet on a table) must be faceted on the corresponding Synapse table/view. There is a performance penalty incurred with each additional facet – hence, facet only those columns needed by the portal and limit to those likely to be useful.

Display Name

Column Name

Column Type

Link Format

Facet Y/N

Facet Order

Card UI Mapping

Destination

Link Query Key

Link Value Column

Searchable Y/N

Search Order

Search

hint text

Hint Text

Icon







icon

default = disk

portalDisplayName






Dataset Name

datasetName

STRING


N

Card_Titleid

NA

title

Datasets/DetailsPage

datasetId

datasetId

Y

1

e.g. migration

Center Name


datasetId

centerName

ENTITY


N

Card_SubTitleYe.g. immunologyidNNDescriptionsummaryNCard_DescriptionY

NA





N

NA



datasetAlias

STRING


N

NA





N

NA


Description

description

LARGE_TEXT


N

NA

description




Y

2

e.g. spatiotemporal

Publication

Title

publication

STRING

markdown: 
[publicationTitle](pubMedUrl)

N

Secondary_Label_1

NA

secondaryLabels[0]

PubMed record



Y

4

e.g. immune escape

Overall Design

overallDesign

PubMed

STRING


N

NTheme

NA

secondaryLabels[1]




Y

3


Theme

Y

theme

Secondary_Label_2

STRING_LIST*


Y

1





N

NA

e.g. tumor-immune

Disease

Tumor Type

tumorType

STRING_LIST*


Y

Secondary_Label_3

3

secondaryLabels[2]




Y

7

e.g. Skin Cutaneous Melanoma

Assay

experimentalStrategy

assay

STRING_LIST*


Y

Secondary_Label_4

2

secondaryLabels[3]




Y

6

e.g. RNA-seq

Species

species

STRING_LIST*


Y

Secondary_Label_5Y

4

secondaryLabels[4]




N

NA

e.g. Human

External Link

externalLinkNameNSecondary_Label_6externalLinkN

externalLink

STRING


N

NA

secondaryLabels[5]

URL embedded in HTML



N

NA

e.g. GSE93776

Grant Name

grantName

STRING_LIST*

portal query (each)

Y

5

secondaryLabels[6]

Grants/DetailsPage

grantName

grantName

Y

5

e.g.

 GSE93776

immunology

ProgramY

Consortium

consortium

STRING_LIST*


Y

Secondary_Label_7

6

secondaryLabels[7]




N

NA

e.g. PS-ON

Grant TypegrantTypeYSecondary_Label_8Ye.g. U01

*<TYPE>_LIST columns for multi-value annotations not yet implemented

...

Details page config 

Detail pages should display the above information (i.e., from the card) in the header/banner of the page. The query to get that information should be on this table using datasets:

SELECT * FROM syn18488466 where "datasets" = 'syn7248581'

Additionally, we should display files associated with this dataset by querying the files table using datasets, i.e.,.

files:

SELECT * FROM syn9630847 where "datasets" = 'syn7248581'