Versions Compared

Old Version 4

changes.mady.by.user Bruce Hoff

Saved on

compared with

New Version Current

changes.mady.by.user Bruce Hoff

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migrated to Confluence 4.0

...

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Unix space: 3.6GB

Unix space: 3.6 GB

Unix space: 1.4GB

Unix time: 0:05:19

Unix time: 0:04:52

Unix time: 0:00:34

 


 

 

 


Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):

0%

42 44.8% 0%

Module co-membership comparison (vs. this column as a baseline):

turquoise blue grey
  turquoise      1281    0    0
  blue              0 1212    0
  grey              0    0   41

turquoise blue grey
  1       900  539    1 829    0    0
  0       579  112   42
  2       370   74    564    0    0
  0         7  348   40
  3         4  251    3         0  408    0

 

 

 

Image RemovedImage Added

<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.


WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>

Image RemovedImage Added

 

 

 

We show that the dendrograms are identical by permuting the rows of a diagonal matrix according to the leaf reordering of one dendrogram, while permuting the columns of the diagonal matrix according to the leaf reordering of the other dendrogram.   Identical leaf positions maintain the matrix's diagonal.
Image Added