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Synapse TableDEPRECATED!

Synapse Table: https://www.synapse.org/#!Synapse:syn21517424/tables/

Previously used Synapse view: https://www.synapse.org/#!Synapse:syn18483791/tables/

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Consortium8Diagnosis_or_Model_SystemSpecies5

Display Name	Column Name	Facet Y/N	UI Mapping	Destination	Searchable Y/N	Search hint text
			Icon	default icon = microscope
	nameportalDisplayName	N	Card_Titleid	link to study detail pages, with information population from studies view (syn18483791) with row/entry having studies column set to value in studies column in this table.	Y	e.g. migration
Center Name	centerName	N	Card_SubTitle		Y	e.g. immunology
	studies	N
	id	N			N
Description	description	N	SecondaryCard_Label_1Description		Y	Assay	Program		e.g. spatiotemporal
Publication	Title	N	Secondary_Label_	1	Data_Contributor	Card_SubTitle	Data Types	DataType_All	Secondary_Label_1	DataType_Name	Diagnosis	PubMed	Y	e.g. immune escape
	PubMed	N
Theme	Theme	Y	Secondary_Label_2	Grant	Grant	Secondary_Label_9	Model	Model_System	Notes		Individuals	Number_of_Individuals	Y	e.g. tumor-immune
Disease	tumorType	Y	Secondary_Label_3	Organism		Tissue	Sample_Type	Secondary_Label_4	Species	Y	e.g. Skin Cutaneous Melanoma
Assay	experimentalStrategy	Y	Secondary_Label_	4	Study	Study_Description	Card_Description	Study_Name	Card_Title	Link to Synapse entity found in "Study" field		Study_Type	Cohort Type	Cohort_Type	Y	e.g. RNA-seq
Program	consortium	Y	Secondary_Label_6	Study Status	Study_Status	Secondary_Label_7
data portal name	synapse file view column	facet	priority	concept	example	GDC equivalent	faceted on GDC	facet on CSBC	GDC reference	size	restricted values	comments	in AMP-AD portal	in NF portal
	Y	e.g. PS-ON
Grant Type	grantType	yes	3	U54 or U01	Program	consortium	yes	3	CSBC or PSON	Species	NA	N/A	N/A	none	yes	Theme	Theme	yes	2	tumor-heterogeneity	none	yes	Data Category	NA	N/A	N/A	Broad categorization of the contents of the data file.	Transcriptome Profiling	data_category	yes	yes	CSBC will need to add values to those in GDC (which only cover sequencing)	Assay	experimentalStrategy	yes	2	The sequencing strategy used to generate the data file. REMOVE "sequencing" for CSBC.	RNA-Seq Total RNA-Seq	assay	yes	yes	CSBC will need to add values to those in GDC (which only cover sequencing)	Platform	NA	N/A	N/A	platform	yes	yes	Disease Type	tumorType	yes	2	The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Acinar Cell Neoplasms Adenomas and Adenocarcinomas Adnexal and Skin Appendage Neoplasms Basal Cell Neoplasms Blood Vessel Tumors	case/disease_type	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case	Site	NA	N/A	N/A	The text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Accessory sinuses Adrenal gland Anus and anal canal Base of tongue Bladder	case/primary_site	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case	Tissue	NA	N/A	N/A	The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Abdomen, NOS Abdominal esophagus Accessory sinus, NOS Acoustic nerve Adrenal gland, NOS	diagnosis/tissue_or_organ_of_origin	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=diagnosisY	Secondary_Label_7	Y	e.g. U01
Datasets	datasets	N	Secondary_Label_5	comma-separated list of synIds, should link to dataset detail pages, with information populated from datasets view (syn18488466) with row/entry having datasets column set to this value.	N

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