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changes.mady.by.user Brian White

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Source data 

Synapse Table: https://www.synapse.org/#!Synapse:syn21517423syn21868591/tables/

Previously used DEPRECATED Synapse fileviewFile View: https://www.synapse.org/#!Synapse:syn18488466/tables/      

NOTE: Studies are selected in this view with is.dataset == TRUE 

DEPRECATED Synapse Table: https://www.synapse.org/#!Synapse:syn21517423/tables/

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Explore page config

Type / name of card: "Datasets"

Number of Secondary Fields to show: 4

Note that there is no explicit aliasing between Column Name and Display Name. Rather, camelCase Column Names are automatically rendered as Camel Case. The table below just makes that clear.

Facets should be ordered in the order they appear in this table.

Any column that should be faceted in the portal (i.e., faceted on an explore page or have a column facet on a table) must be faceted on the corresponding Synapse table/view. There is a performance penalty incurred with each additional facet – hence, facet only those columns needed by the portal and limit to those likely to be useful.

Display Name

Column Name

Column Type

Link Format

Facet Y/N

Facet Order

Card UI Mapping

Destination

Link Query Key

Link Value Column

Searchable Y/N

Search

hint textIcon

Order

Search Hint Text







icon

default = disk






Dataset Name

datasetName

portalDisplayNameY

STRING


N

Card_Titlelink to dataset detail pages, with information population from datasets view (syn18488466) with row/entry having datasets column set to value in datasets column in this table.

NA

title

Datasets/DetailsPage

datasetId

datasetId

Y

1

e.g. migration

Center Name


datasetId

centerName

ENTITY


N

Card_SubTitle

NA

Ye.g. immunologyidN





N

NA



datasetAlias

STRING


N

datasets

NA





N

NA


Description

summary

description

LARGE_TEXT


N

Card_Description

NA

description




Y

2

e.g. spatiotemporal

Publication

Title

publication

STRING

markdown: 
[publicationTitle](pubMedUrl)

N

Secondary_Label_1

NA

secondaryLabels[0]

PubMed record



Y

4

e.g. immune escape

PubMedNN

Overall Design

overallDesign

STRING


N

Secondary_Label_2Theme

NA

secondaryLabels[1]




Y

3


Theme

Y

theme

Secondary_Label_3

STRING_LIST*


Y

1





N

NA

e.g. tumor-immune

Disease

Tumor Type

tumorType

STRING_LIST*


Y

Secondary_Label_4

3

secondaryLabels[2]




Y

7

e.g. Skin Cutaneous Melanoma

Assay

experimentalStrategy

assay

STRING_LIST*


Y

Secondary_Label_5

2

secondaryLabels[3]




Y

6

e.g. RNA-seq

Studies

Species

studiesSpeciesspeciesYSecondary_Label_7Y

species

NSecondary_Label_6

comma-separated list of synIds, should link to study detail pages,

with information populated from studies view (syn18483791) with row/entry having

studies column set to this value.

Ye.g. syn13857585

STRING_LIST*


Y

4

secondaryLabels[4]




N

NA

e.g. Human

External Link

externalLink

STRING


N

Secondary_Label_8

NA

secondaryLabels[5]

URL embedded in HTML



N

NA

e.g. GSE93776

ProgramconsortiumYSecondary_Label_9Y

Grant Name

grantName

STRING_LIST*

portal query (each)

Y

5

secondaryLabels[6]

Grants/DetailsPage

grantName

grantName

Y

5

e.g. immunology

Consortium

consortium

STRING_LIST*


Y

6

secondaryLabels[7]




N

NA

e.g. PS-ON

Grant TypegrantTypeYSecondary_Label_10Ye.g. U01

*<TYPE>_LIST columns for multi-value annotations not yet implemented

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Details page config 

Detail pages should display the above information (i.e., from the card) in the header/banner of the page. The query to get that information should be on this table using datasets:

SELECT * FROM syn18488466 where "datasets" = 'syn7248581'

Additionally, we should display files associated with this dataset by querying the files table using datasets, i.e.,.

files:

SELECT * FROM syn9630847 where "datasets" = 'syn7248581'