Each template should also include a Data Dictionary with a list of each key-definition pair. Each data template should have a brief Assay description (3-5 sentences) about data collection.
See all the available data templates
MODEL-AD Data Templates
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Assay
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Data Template
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data dict
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Behavioral – Frailty
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Behavioral – Open field
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Behavioral – Rotarod
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Behavioral – Spontaneous Alternation
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Behavioral – Wheel running
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Gene Expression – mRNA counts (Nanostring)
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Provide raw files and processed files
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Metadata Nanostring metadata template
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Gene Expression – RNAseq
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Provide FASTQ files and counts. Do not include BAM files.
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Metadata RNAseq metadata template
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Clinical – Blood chemistry measurement
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Immunoassay – Electrochemiluminescence
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Immunoassay – Immunofluorescence
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Electrophysiology – LTP
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Imaging – Autorad
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Metadata Autorad metadata template
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Imaging – MRI
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Metadata MRI metadata templat
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Imaging – PET
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Metadata PET metadata template
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Pharmacokinetic Study
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Template In Progtess
Each set should be in a CSV file. Values and their units should not be in separate cells.
MODEL-AD Data Collection across Sites
https://www.synapse.org/#!Synapse:syn24167530
This table includes a list of data type we anticipate from each MODEL-AD site. The Assay
JAX | IU | PITT | UCI | ||||||||
Assay | DMP | DMP | PTC | PTC | DMP | ||||||
Data Transfer
This section describes how MODEL-AD teams should contribute data to the DCC. In our onboarding call, we will review how MODEL-AD content is organized in the portal. It is important we all understand clearly what content will be transferred (data type, file format, file naming, number of files).
Let us know about your next planned data contribution: https://forms.gle/YJaPuEumYRnwm8916
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Gene expression | |||||
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Imaging | |||||
Pharmacokinetic - Template in Development |