Synapse Table: https://www.synapse.org/#!Synapse:syn18483791syn18488466/tables/
NOTE: Studies are selected in this view with is.study dataset == TRUE
Number of Secondary Fields to show: 4
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| Display Name | Column Name | Facet Y/N | UI Mapping | Destination | Searchable Y/N | Search hint text |
|---|---|---|---|---|---|---|
| Icon | default icon = microscope | |||||
| name | N | Card_Title | id | Y | ||
| Center Name | centerName | N | Card_SubTitle | Y | ||
| id | N | N | ||||
| Description | description | N | Secondary_Label_1 | Y | ||
| Theme | Theme | Y | Secondary_Label_2 | Y | ||
| Disease | tumorType | Y | Secondary_Label_3 | Y | ||
| Assay | experimentalStrategy | Y | Secondary_Label_4 | Y | ||
| Program | consortium | Y | Secondary_Label_5 | Y | ||
| Grant Type | grantType | Y | Secondary_Label_6 | Y |
| data portal name | synapse file view column | priority | facet | concept | example | GDC equivalent | faceted on GDC | facet on CSBC | GDC reference | size | restricted values | comments | in AMP-AD portal | in NF portal |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Dataset name | name | 1 | no | |||||||||||
| id | id | name and download button should link to this | no | |||||||||||
| featured | featured | should the card be displayed? | no | |||||||||||
| Grant Type | grantType | NA | no | U54 or U01 | ||||||||||
| Grant | centerName | NA | no | |||||||||||
| Program | consortium | NA | no | CSBC or PSON | ||||||||||
| Species | species | 2 | yes | none | yes | |||||||||
| Theme | Theme | 2 | yes | tumor-heterogeneity | none | yes | ||||||||
| Assay | experimentalStrategy | 2 | yes | The sequencing strategy used to generate the data file. REMOVE "sequencing" for CSBC. |
| experimental_strategy | yes | yes | CSBC will need to add values to those in GDC (which only cover sequencing) | |||||
| Platform | platform | 2 | yes | platform | yes | yes | ||||||||
| Disease Type | tumorType | 2 | yes | The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). |
| case/disease_type | yes | yes | https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case |