Synapse Table: syn17083367Synapse Table: https://www.synapse.org/#!Synapse:syn18483791/tables/
NOTE: Studies are selected in this view with is.study == TRUE
Number of Secondary Fields to show: 4
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| Display Name | Column Name | Facet Y/N | UI Mapping | Destination | Searchable Y/N | Search hint text | Access_Type|
|---|---|---|---|---|---|---|---|
| Icon | default icon = NULLcontrolled access = "Controlled"microscope | ||||||
| name | N | Card_Title | id | Y | |||
| Center Name | centerName | N | Card_SubTitle | Y | |||
| id | N | N | |||||
| Description | description | N | Secondary_Label_1 | Y | |||
| Assay | |||||||
| Program | Consortium | Secondary_Label_8 | |||||
| Data_Contributor | Card_SubTitle | ||||||
| Data Types | DataType_All | Secondary_Label_1 | |||||
| DataType_Name | |||||||
| Diagnosis | Diagnosis_or_Model_System | Secondary_Label_2 | |||||
| Grant | Grant | Secondary_Label_9 | |||||
| Model | Model_System | ||||||
| Notes | |||||||
| Individuals | Number_of_Individuals | Secondary_Label_3 | |||||
| Organism | |||||||
| Tissue | Sample_Type | Secondary_Label_4 | |||||
| Species | Species | Secondary_Label_5 | |||||
| Study | |||||||
| Study_Description | Card_Description | ||||||
| Study_Name | Card_Title | Link to Synapse entity found in "Study" field | |||||
| Study_Type | |||||||
| Cohort Type | Cohort_Type | Secondary_Label_6 | |||||
| Study Status | Study_Status | Secondary_Label_7 |
| data portal name | synapse file view column | facet | priority | concept | example | GDC equivalent | faceted on GDC | facet on CSBC | GDC reference | size | restricted values | comments | in AMP-AD portal | in NF portal |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Grant Type | grantType | yes | 3 | U54 or U01 | ||||||||||
| Program | consortium | yes | 3 | CSBC or PSON | ||||||||||
| Species | NA | N/A | N/A | none | yes | |||||||||
| Theme | Theme | yes | 2 | tumor-heterogeneity | none | yes | ||||||||
| Data Category | NA | N/A | N/A | Broad categorization of the contents of the data file. |
| data_category | yes | yes | CSBC will need to add values to those in GDC (which only cover sequencing) | |||||
| Assay | experimentalStrategy | yes | 2 | The sequencing strategy used to generate the data file. REMOVE "sequencing" for CSBC. |
| assay | yes | yes | CSBC will need to add values to those in GDC (which only cover sequencing) | |||||
| Platform | NA | N/A | N/A | platform | yes | yes | ||||||||
| Disease Type | tumorType | yes | 2 | The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). |
| case/disease_type | yes | yes | https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case | |||||
| Site | NA | N/A | N/A | The text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). |
| case/primary_site | yes | yes | https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case | |||||
| Tissue | NA | N/A | N/A | The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O). |
| diagnosis/tissue_or_organ_of_origin | yes | yes | https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=diagnosis |