Page Comparison

Synapse Table: https://www.synapse.org/#!Synapse:syn18483791/tables/

...

ProgramConsortium8DataType_All1DataType_Name9ModelModel_SystemSpeciesCohort_Type

Display Name	Column Name	Facet Y/N	UI Mapping	Destination	Searchable Y/N	Search hint text
			Icon	default icon = microscope
	name	N	Card_Title	id	Y
Center Name	centerName	N	Card_SubTitle		Y
	id	N			N
Description	description	N	Secondary_Label_1		Y
AssayTheme	Theme	Y	Secondary_Label_	2	Data_Contributor	Card_SubTitle		Data Types	Y
Disease	tumorType	Y	Secondary_Label_	3		Y
Diagnosis	Diagnosis_or_Model_System	Secondary_Label_2	Grant	Grant	Assay	experimentalStrategy	Y	Secondary_Label_	4		Y
Program	Notes	Individuals	Number_of_Individuals	Secondary_Label_3	Organism	Tissue	Sample_Type	Secondary_Label_4	Species	consortium	Y	Secondary_Label_5	Study	Study_Description	Card_Description	Study_Name	Card_Title	Link to Synapse entity found in "Study" field		Study_Type	Cohort Type	Y
Grant Type	grantType	Y	Secondary_Label_6	Study Status	Study_Status	Secondary_Label_7
data portal name	synapse file view column	facet	priority	concept	example	GDC equivalent	faceted on GDC	facet on CSBC	GDC reference	size	restricted values	comments	in AMP-AD portal	in NF portal
	Grant Type	grantType	yes	3	U54 or U01	Program	consortium	yes	3	CSBC or PSON	Species	NA	N/A	N/A	none	yes	Theme	Theme	yes	2	tumor-heterogeneity	none	yes	Data Category	NA	N/A	N/A	Broad categorization of the contents of the data file.	Transcriptome Profiling	data_category	yes	yes	CSBC will need to add values to those in GDC (which only cover sequencing)	Assay	experimentalStrategy	yes	2	The sequencing strategy used to generate the data file. REMOVE "sequencing" for CSBC.	RNA-Seq Total RNA-Seq	assay	yes	yes	CSBC will need to add values to those in GDC (which only cover sequencing)	Platform	NA	N/A	N/A	platform	yes	yes	Disease Type	tumorType	yes	2	The text term used to describe the type of malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Acinar Cell Neoplasms Adenomas and Adenocarcinomas Adnexal and Skin Appendage Neoplasms Basal Cell Neoplasms Blood Vessel Tumors	case/disease_type	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case	Site	NA	N/A	N/A	The text term used to describe the general location of the malignant disease, as categorized by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Accessory sinuses Adrenal gland Anus and anal canal Base of tongue Bladder	case/primary_site	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=case	Tissue	NA	N/A	N/A	The text term used to describe the anatomic site of origin, of the patient's malignant disease, as described by the World Health Organization's (WHO) International Classification of Diseases for Oncology (ICD-O).	Abdomen, NOS Abdominal esophagus Accessory sinus, NOS Acoustic nerve Adrenal gland, NOS	diagnosis/tissue_or_organ_of_origin	yes	yes	https://docs.gdc.cancer.gov/Data_Dictionary/viewer/#?view=table-definition-view&id=diagnosisY

Versions Compared

Old Version 3

New Version 4

Key