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h5. Batch vs clinical traits Number of clinical traits: 57, number of theoretical DNA methylation batches: 20 Correlation of batch with the center {code:collapse=true}> table(batchID, center) center batchID A5 AJ AP AW AX B5 BG BK BS D1 DF DI E6 EC EO EY FI H5 A00U 0 0 9 0 13 0 0 2 0 0 0 0 0 0 0 0 0 0 A039 18 0 13 0 2 7 6 0 0 0 0 0 0 0 0 0 0 0 A105 7 0 4 0 1 7 13 1 14 0 0 0 0 0 0 0 0 0 A10A 1 0 0 0 1 0 3 0 3 0 0 0 0 0 0 0 0 0 A10N 0 0 0 0 1 7 3 0 1 8 0 0 0 0 0 0 0 0 A10Q 7 0 4 0 1 7 13 1 14 0 0 0 0 0 0 0 0 0 A123 4 0 4 0 4 13 4 3 4 11 0 0 0 0 0 0 0 0 A12K 0 0 0 0 0 0 5 0 1 40 0 1 0 0 0 0 0 0 A138 0 0 12 0 15 0 0 0 0 0 0 3 0 0 0 0 0 0 A13K 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 20 0 0 A145 0 0 0 0 0 4 0 0 0 0 0 0 2 0 0 1 0 0 A14H 3 0 1 0 0 5 0 0 2 6 0 0 1 1 0 2 0 0 A14N 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 2 0 0 A161 0 2 0 1 0 0 3 0 0 0 0 1 0 0 3 2 0 0 A16G 0 0 0 0 0 0 2 1 0 2 0 1 0 2 0 0 0 0 A17F 0 0 0 0 9 1 1 0 0 4 0 0 0 0 0 0 13 0 A17H 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 A17Z 3 0 0 0 3 0 0 0 0 1 5 0 0 0 5 0 0 1 A18O 2 5 0 0 3 0 1 0 0 0 1 1 0 0 3 2 1 0 A19Z 0 6 0 0 0 4 1 0 0 2 0 2 2 0 7 3 0 0{code} Correlation with clinical |
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Batch vs survival
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traits (complete table is here) {csv}UCEC,DataType,NumberOfNAs,Test,Pvalue histological_type,factor,69,Pearson's Chi-squared test,9.48E-27 year_of_initial_pathologic_diagnosis,integer,68,Kruskal-Wallis rank sum test,1.18E-17 days_to_form_completion,integer,68,Kruskal-Wallis rank sum test,3.78E-15 prosp_tissue_coll,factor,68,Pearson's Chi-squared test,9.22E-15 retro_tissue_coll,factor,68,Pearson's Chi-squared test,6.46E-14 tumor_grade,factor,73,Pearson's Chi-squared test,9.17E-11 days_to_last_followup,integer,84,Kruskal-Wallis rank sum test,1.15E-10 surgical_approach,factor,72,Pearson's Chi-squared test,5.31E-04 followup_met_assessment_outcome_success_margin_status,factor,126,Pearson's Chi-squared test,1.07E-03 total_pelv_lnr,integer,80,Kruskal-Wallis rank sum test,1.21E-03 first_pathologic_diagnosis_biospecimen_acquisition_method_type,factor,70,Pearson's Chi-squared test,1.53E-03 peritoneal_wash,factor,85,Pearson's Chi-squared test,1.11E-02 vital_status,factor,68,Pearson's Chi-squared test,2.98E-02 days_to_birth,integer,68,Kruskal-Wallis rank sum test,6.14E-02 age_at_initial_pathologic_diagnosis,integer,68,Kruskal-Wallis rank sum test,6.22E-02 person_neoplasm_cancer_status,factor,97,Pearson's Chi-squared test,6.44E-02 total_aor.lnp,integer,137,Kruskal-Wallis rank sum test,6.49E-02 total_aor_lnr,integer,83,Kruskal-Wallis rank sum test,8.01E-02 weight,integer,72,Kruskal-Wallis rank sum test,8.12E-02{csv} h5. Batch vs survival\\ h5. DNA methylation |