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- Application Framework: Spring
- Test: JUnit as test framework, Easy Mock 3.0 for mock objects in unit tests
- Mock Objects: Use Mockito to Mock up objects for tests.
- Dates:
- All dates should be in ISO-8601 format.
- ISO-8601 is the default for the joda-time library
- Use the DateTime object from joda-time. Do not use java.text.DateFormat or java.text.SimpleDateFormat.
- The reason for doing this is to make the right thing (ISO-8601) the easy thing. If you instead write out your own date formats, date/timezone bugs are easier to create.
R
- R Installation
- Bioconductor
- Eclipse Plugin for R
- You'll also need to install some tools that R package builds depend upon:
- Windows
- Download and unpack https://s3.amazonaws.com/nicole.deflaux/RStuff/DocumentationAndToolsForBuildingRPackageOnWindows.zip
- Follow the instructions on the first three slides of
doc/buildingPackages110406.pdf
for how to install all the tools
- Mac OSX
- Windows
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