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Dataset | # Probes | # Samples | Sage Time | Sage Space | Package Time | Package Space | Sage beta | Package beta | Gene trees same, independent beta? | Gene trees same, same beta? | Module difference, independent beta | Module difference (%) , same beta |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Female mouse liver | 3600 | 135 | --- | --- | --- | --- | 6.5 | 6.5 | TRUE | TRUE | 3.7% | 3.7% |
Cranio | 2534 | 249 | --- | --- | --- | --- | 4.0 | 4.5 | FALSE / | TRUE * | 44% | 44% / 0.9% * |
Methylation, top 5K genes | 5000 | 555 | --- | --- | --- | --- | 8.5 | 8.5 | TRUE | TRUE | 0 | 0 |
Colon cancer, top 5K genes | 5000 | 322 | --- | --- | --- | --- | 3 | 3.5 | FALSE | FALSE / TRUE * | 11% / | 0.5% * |
Human liver cohort, top 5K genes | 5000 | 427 | --- | --- | --- | --- | 11 | 11 | TRUE | TRUE | 1.0% | 1.0% |
PARC | 18,392 | 960 | 5h:55m | 83.9 GB | 2h 1h:06m 86.2 GB 40mm | 71 GB | 8 | 7.5 FALSE / ??* | FALSE | FALSE | 4.7% / ??* 7% | 0.6% |
Methylation (full set)** | 27,578 | 555 | 24h:45m | 180 GB | 13h:20m | 196 GB | 8 | 11.5 | FALSE / | FALSE * | 14% / | 0.2% * |
Colon cancer, top 40K genes** | 40,000 | 322 | Out of memory*** | --- | Out of memory*** | --- | --- | --- | --- | --- | --- | --- |
Human liver cohort** | 40,102 | 427 | Out of memory*** | --- | Out of memory*** | --- | --- | --- | --- | --- | --- | --- |
* Force beta in Package to match beta in Sage code.
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