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Dataset | # Probes | # Samples | Sage Time | Sage Space | Package Time | Package Space | Sage beta | Package beta | Gene trees same? | Module difference (%) | |||
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Female mouse liver | 3600 | 135 | --- | --- | --- | --- | 6.5 | 6.5 | YES | 3.7% | |||
Cranio | 2534 | 249 | --- | --- | --- | --- | 4.0 | 4.5 | YES | 44% | |||
Methylation, top 5K genes | 5000 | 555 | --- | --- | --- | --- | 8.5 | 8.5 | YES | 0 | |||
Colon cancer, top 5K genes | 5000 | 322 | --- | --- | --- | --- |
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Human liver cohort, top 5K genes | 5000 | 427 | --- | --- | --- | --- |
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| 6.5 | 5.5 | YES | 33% |
Methylation (full set) | 27,578 | 5555 |
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Colon cancer, top 40000 genes | 40,000 | 322 |
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Human liver cohort | 40,102 | 427 |
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