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Evaluation
Dataset | # Probes | # Samples |
| Sage Time | Sage Space | Package Time | Package Space | Sage Beta | Package Beta | Gene trees same? | Module difference (%) | ||||||
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Female mouse liver | 3600 | 135 |
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| 6.5 | 6.5 | YES | 3.7% |
Cranio | 2534 | 249 | --- | --- | --- | --- |
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Methylation (gene subset) | ?? | 555 |
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Colon cancer (small gene subset) | ?? | 322 |
| 4.0 | 4.5 | YES | 44% | ||||||||||
Methylation, top 5K genes | 5000 | 555 | --- | --- | --- | --- |
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2534 | 249 | Colon cancer, top 5K genes | 5000 | 322 | --- | --- | --- | --- |
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| Methylation (full set) | 27,578 | 5555 |
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Colon cancer (large gene subset) |
| 322 | , top 40000 genes | 40,000 | 322 |
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Human liver cohort | 40,102 | 427 |
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Note: We skip the performance evaluation for the small data sets.
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