Synapse table for this card: https://www.synapse.org/#!Synapse:syn10923842/tables/
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| column name | synapse table name | standardized schema name | required | facet | card location | desired for CSBC/PS-ON | concept | example | required | column type | size | restricted values | comments | in AMP-AD portal | in NF portal | GDC equivalent | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Keywords | Keywords | no | secondary (though I could see these as pills directly beneath the title?) | yes | Keywords associated with this publication, some of which may come from a controlled vocabulary | tumor heterogeneity | yes | string vector | unrestricted | no | ||||||||||||||||||||||
| Abstract | Abstract | no | NA | no | largeText | |||||||||||||||||||||||||||
| Disease Type | diseaseType | yes | secondary | yes | The type of cells that carcinoma arises from. | Adenocarcinoma, Anaplastic Astrocytoma | yes | string vector | many | yes | related to Disease Type | |||||||||||||||||||||
| Experimental Strategy | experimentalStrategy | yes | secondary | yes | RNA-seq | no | string vector | many | no | related to Experimental Strategy | ||||||||||||||||||||||
| Site | tissue_or_organ | yes | secondary | yes | yes | many | no | related to Primary Site | ||||||||||||||||||||||||
| doi | doi | doi | no | no | NA | yes | doi without wwww.doi.org/ prefix: eg: 10.1093/neuonc/noy046 | yes | yes | projectName | no | display name of project | don't know what this is | yes | studyId | no | synapse id of Study -Synapse project or folder | no | entity vector | yes, as "id" | datasetId | no | synapse id of datasets | no | entity vector | |||||||
| Title | Title | Title | yes | no | topprimary | yes | publication title | yes | string | no | ||||||||||||||||||||||
| Authors | Authors | Author | yes | no | topprimary | yes | publication authors | yes | string vector | no | ||||||||||||||||||||||
| Journal | Journal | Journal | yes | no | topprimary | yes | publication journal | yes | string | no | ||||||||||||||||||||||
| Year | Publication Year | Year | no | yes | topprimary | yes | publication year | yes | number | no | ||||||||||||||||||||||
| featured | no | yes | whether the card should be on the homepage (max 3 in table) | yes | ||||||||||||||||||||||||||||
| Link to Synapse site | CSBC PSON Center | no | no | Link to a Synapse URL (i.e., a Synapse project or more generally a Synapse Wiki) representing the project/grant. | ||||||||||||||||||||||||||||
| Program | Consortium | yes | tertiary (possibly don't display on car) | yes | yes | string | CSBC, PSON | |||||||||||||||||||||||||
| Grant Type | grantType | yes | tertiary (possibly don't display on card) | yes | yes | U54, U01 | ||||||||||||||||||||||||||
| Datasets | datasets | no | secondary | yes | Links to datasets in portal. How should this be represented? | |||||||||||||||||||||||||||
| Studies | studies | no | secondary | yes | Links to study in portal. How should this be represented? | |||||||||||||||||||||||||||
| Grant | grant | no | tertiary (possibly don't display on card) | yes | U54 or U01 center |
Until Synapse has a solution for multiple values in a single table cell (i.e., vectors), use pipe " | " to separate multiple values. Eg: fundingAgency: CTF | NTAP.
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