Synapse table for this card: https://www.synapse.org/#!Synapse:syn10923842/tables/
...
desired for CSBC/PS-ON: should this column be included in the CSBC data portal
Need to add to the above Synapse tableThe following have been added to the synapse table, but are blank. They need to be filled in: grantType, datasets, studies, tissue_or_organ, diseaseType, experimentalStrategy, featured, abstract
column name | synapse table name | facet | desired for CSBC/PS-ON | concept | example | required | column type | size | restricted values | comments | in AMP-AD portal | in NF portal | GDC equivalent |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Keywords | Keywords | no | yes | Keywords associated with this publication, some of which may come from a controlled vocabulary | tumor heterogeneity | yes | string vector | unrestricted | no | ||||
Abstract | Abstract | no | yes | largeText | |||||||||
Disease Type | diseaseType | yes | yes | The type of cells that carcinoma arises from. | Adenocarcinoma, Anaplastic Astrocytoma | yes | string vector | many | yes | related to Disease Type | |||
Experimental Strategy | experimentalStrategy | yes | yes | RNA-seq | no | string vector | many | no | related to Experimental Strategy | ||||
dataType | no | drugScreen, geneExpression, image | no | string vector | many | no | related to Data Category and Data Type | ||||||
dataSubtype | no | raw, processed, metadata, dataMatrix | no | string vector | many | no | related to Data Type, Workflow Type, and Data Format | ||||||
diagnosis | no | Neurofibromatosis 1, Breast Cancer | no | string vector | many | yes, as disease focus | |||||||
isCellLine | no | no | boolean | true/false | no | ||||||||
Site | tissue_or_organ | yes | yes | yes | many | no | related to Primary Site | ||||||
platform | no | HiSeq2000 | no | string vector | no | Platform | |||||||
tissue | no | no | no | ||||||||||
doi | PubMed | yes | doi without wwww.doi.org/ prefix: eg: 10.1093/neuonc/noy046 | yes | yes | ||||||||
projectName | no | display name of project | don't know what this is | yes | |||||||||
studyId | no | synapse id of Study -Synapse project or folder | no | entity vector | yes, as "id" | ||||||||
datasetId | no | synapse id of datasets | no | entity vector | |||||||||
fundingAgency | no | no | yes | ||||||||||
citation | no | the citation of the study in the format Author1 et al. Title. Journal (Year). | no | yes | |||||||||
Title | Title | no | yes | publication title | yes | string | no | ||||||
Authors | Authors | no | yes | publication authors | yes | string vector | no | ||||||
Journal | Journal | no | yes | publication journal | yes | string | no | ||||||
Year | Publication Year | yes | yes | publication year | yes | number | no | ||||||
featured | no | yes | whether the card should be on the homepage (max 3 in table) | yes | |||||||||
Link to Synapse site | CSBC PSON Center | no | no | Link to a Synapse URL (i.e., a Synapse project or more generally a Synapse Wiki) representing the project/grant. | |||||||||
Program | Consortium | yes | yes | yes | string | CSBC, PSON | |||||||
Grant Type | grantType | yes | yes | yes | U54, U01 | ||||||||
Datasets | datasets | no | yes | Links to datasets in portal. How should this be represented? | |||||||||
Studies | studies | no | yes | Links to study in portal. How should this be represented? |
...