...
The TOM values are the inputs to the clustering algorithms. The dendrograms appear nearly identical above, therefore it seems the differences between the two algorithms are in the module determination from the dendrograms.
Analysis of the effect of dividing genes into 'blocks'
...
WGCNA, one block
| WGCNA, 7 blocks (block size < 600)
|
|---|
| Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership): | | 7.5%
|
Module co-membership comparison (vs. this column as a baseline):
| | 1 3 2 5 4 7 6 13 10 16 11 8 0 17 14 15 12 18 9 19 20 22 21
1 322 5 3 0 16 0 10 0 120 0 3 8 6 0 85 11 9 0 10 0 0 0 1
5 7 262 3 0 0 3 0 0 0 0 26 0 2 0 8 0 0 0 0 1 0 0 0
3 1 3 233 1 12 0 3 0 3 0 1 94 8 0 0 0 1 2 47 0 0 0 0
4 3 1 10 210 10 7 1 0 9 0 3 13 2 0 0 1 37 0 5 0 0 1 3
2 2 2 57 0 195 0 179 0 0 0 0 9 3 0 0 0 3 0 10 0 0 0 0
7 2 13 3 0 0 184 0 0 0 0 0 1 0 0 0 0 0 0 7 1 0 0 0
9 0 0 0 0 1 0 0 120 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
11 1 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0
10 98 0 0 0 5 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0
8 18 3 0 21 1 0 3 0 4 0 98 0 3 0 5 0 0 0 1 0 0 0 0
0 0 0 0 0 0 1 0 0 0 0 0 0 94 0 4 0 0 0 0 0 0 0 0
6 14 0 6 0 2 0 3 0 0 0 0 24 13 91 0 0 0 0 68 0 0 0 0
14 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 74 0 0 0 0 0 0 0
12 18 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0 0 0 0
13 10 0 0 0 0 0 0 0 0 0 0 6 0 0 0 1 3 70 1 0 0 0 0
15 1 12 2 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 48 0 0 0
17 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 40 0 0
18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 0
16 15 8 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 32 |
| |
