Versions Compared

Old Version 59

changes.mady.by.user Brian Holt

Saved on

compared with

New Version 60

changes.mady.by.user Nicole Deflaux

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • All Sage employees will have their sagebase.org username as their IAM username
  • Platform users register with an email address and we will use that email address as their IAM username.
  • User d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440 is the platform@sagebase.org user (also known as Brian Holt :-).  In general, you should only see activity from that user when we are using BucketExplorer to manage our files in S3.
    Code Block
    arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:19:32:44 +0000]	REST.GET.OBJECT	human_liver_cohort/readme.txt

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:19:32:56 +0000]	REST.GET.OBJECT	human_liver_cohort/readme.txt

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:19:32:58 +0000]	REST.GET.OBJECT	human_liver_cohort/readme.txt

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:17:47:45 +0000]	REST.GET.LOCATION	-

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:17 +0000]	REST.GET.LOGGING_STATUS	-

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:19 +0000]	REST.HEAD.OBJECT	human_liver_cohort.tar.gz

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:19:32:40 +0000]	REST.GET.BUCKET	-

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:17:47:46 +0000]	REST.GET.BUCKET	-

arn:aws:iam::325565585839:user/nicole.deflaux	[17/Feb/2011:01:48:42 +0000]	REST.GET.BUCKET	-

arn:aws:iam::325565585839:user/nicole.deflaux	[17/Feb/2011:01:48:42 +0000]	REST.GET.LOCATION	-

arn:aws:iam::325565585839:user/nicole.deflaux	[17/Feb/2011:01:48:51 +0000]	REST.HEAD.OBJECT	mouse_model_of_sexually_dimorphic_atherosclerotic_traits.tar.gz

arn:aws:iam::325565585839:user/nicole.deflaux	[17/Feb/2011:01:48:51 +0000]	REST.GET.ACL	mouse_model_of_sexually_dimorphic_atherosclerotic_traits.tar.gz

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:17 +0000]	REST.GET.ACL	-

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:19 +0000]	REST.GET.ACL	human_liver_cohort.tar.gz

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:57 +0000]	REST.HEAD.OBJECT	mouse_model_of_sexually_dimorphic_atherosclerotic_traits.tar.gz

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:17 +0000]	REST.GET.NOTIFICATION	-

arn:aws:iam::325565585839:user/nicole.deflaux	[18/Feb/2011:23:42:57 +0000]	REST.GET.ACL	mouse_model_of_sexually_dimorphic_atherosclerotic_traits.tar.gz

arn:aws:iam::325565585839:user/test	[17/Feb/2011:01:55:44 +0000]	REST.GET.OBJECT	mouse_model_of_sexually_dimorphic_atherosclerotic_traits.tar.gz

arn:aws:iam::325565585839:user/test	[16/Feb/2011:23:13:42 +0000]	REST.GET.OBJECT	human_liver_cohort/readme.txt

arn:aws:iam::325565585839:user/test	[16/Feb/2011:23:22:02 +0000]	REST.GET.OBJECT	human_liver_cohort/expression/expression.txt

d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	[16/Feb/2011:23:06:17 +0000]	REST.HEAD.OBJECT	human_liver_cohort/readme.txt

d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	[16/Feb/2011:22:28:38 +0000]	REST.GET.ACL	-

d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	[16/Feb/2011:22:39:57 +0000]	REST.GET.LOCATION	-

d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	[16/Feb/2011:22:40:09 +0000]	REST.COPY.OBJECT	bxh_apoe/causality_result/causality_result_adipose_male.txt

d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	[16/Feb/2011:22:40:16 +0000]	REST.HEAD.OBJECT	bxh_apoe/causality_result/causality_result_adipose_male.txt

. . .


Downloads per file:
bxh_apoe/networks/BxH-ApoE_Brain_Male_batch_3_14_coexp-network.txt	2
bxh_apoe/networks/muscle_male-nodes.txt	2
bxh_apoe/networks/BxH-ApoE_Liver_Male_batch_3_4_coexp-log.txt	2
bxh_apoe/networks/SCN10_BxH-ApoE_Adipose_Male_batch_3_10_coexp.sif	2
bxh_apoe/networks/SCN19_muscle_female_bayesian.sif	2
human_liver_cohort/networks/deLiver_liver_all_adjusted_DE-Octave8_coexp-nodes.txt	2
bxh_apoe/networks/BxH-ApoE_Liver_Male_batch_3_4_coexp-annotation.txt	2
bxh_apoe/networks/BxH-ApoE_Brain_Male_batch_3_14_coexp-nodes.txt	2
bxh_apoe/networks/muscle_female-nodes.txt	2
human_liver_cohort/networks/QuickChip_female_bayesian-annotation.txt	2
. . .
bxh_apoe/networks/liver_female_coexp-annotation.txt	2
bxh_apoe/networks/SCN15_BxH-ApoE_Muscle_Female_batch_1_11_coexp.sif	2
bxh_apoe/networks/SCN7_brain_female_bayesian.sif	2
human_liver_cohort/sage_bionetworks_user_agreement.pdf	5
bxh_apoe/phenotype/	1
bxh_apoe/networks/SCN14_BxH-ApoE_Liver_Male_batch_3_4_coexp.sif	2



Downloads per user:
arn:aws:iam::325565585839:user/nicole.deflaux	17
arn:aws:iam::325565585839:user/test	3
d9df08ac799f2859d42a588b415111314cf66d0ffd072195f33b921db966b440	931

Upload a dataset to S3

UPDATE: We no longer use bucket explorer to upload datasets. Instead we now use datasetCsvLoader.py. Run it with --help to see its options. You can still use bucket explorer to browse datasets.

For the initial upload, a GUI tool called BucketExplorer (http://www.bucketexplorer.com/) is used. Uploads are done from the internal host sodo.fhcrc.org using the local access account 'platform', with the same password as the platform@sagebase.org account. The most efficient way to connect is to use an NX protocol client (http://www.nomachine.com/download.php) to get a virtual desktop as the user platform. Once connected the preconfigured BucketExplorer can be found in the application menu in the lower left corner of the screen.

...