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1. If needed, install R from http://cran.r-project.org/

2. From the R command prompt, install the following packages:

   Code Block
   source('http://depot.sagebase.org/CRAN.R') pkgInstall("synapseClient") # If you plan to use a private SFTP server for hosting data, install the optional Rsftp library: pkgInstall("Rsftp")

   At a later date, we anticipate that these packages will be available via Bioconductor or CRAN

3. Also possibly need to install these:

   Code Block
   pkgInstall("RCurl") pkgInstall("rjson") pkgInstall("digest") pkgInstall("RUnit")

Supported Platforms:

• Windows
• Mac OSX
• Any Linux/Unix platform will use the source of the package and compile/install as-needed

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