Page Comparison

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This is a REST api (see Service API Design for more details as to what this means). You can create entities, updated entities, read entities, and delete entities. More advanced querying will be implemented as a separate API. Partial updates (e.g., just updating two fields in a dataset) are not supported. In a nutshell, when you update something like a dataset, you GET the dataset first, modify the properties you want to change, and then send the entire object back to the service so that this revised entity overwrites the previously stored entity.

Get

...

Datasets

Optional Parameters

offset - integer - 1-based pagination offset
limit - integer - maximum number of results to return
sort - string - the name of the primary field upon which to sort
ascending - boolean - whether or not to sort ascending

Request

Code Block
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA?limit=3"

Response

Code Block

HTTP/1.1 200 OK
ETag: 45672833522610276
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:2207:2445 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked

{
   "nameresults":"Glioblastoma[
TCGA",      {
         "name":"Pediatric AML TARGET",
         "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA/annotations",
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA",
         "version":"0.0.1",
         "description":null,
         "status":"AvailableIn Transition",
         "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA",
         "etag":"4567283351703131409",
         "creator":null"Soheil Meshinchi",
         "creationDate":12961822382291296182253120,
         "releaseDate":null,
         "layers":[
            {
               "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
               "type":"C",
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
            },
       {     {
               "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
               "type":"E",
               "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
            },
            {
               "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
               "type":"G",
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
       }    ] }

Get Annotations for a Dataset

Request

Code Block
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations"

Response

Code Block


HTTP/1.1 200 OK
ETag: -1919132670
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:24:15 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked

{
   "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
   "uri         ]
      },
      {
         "name":"Flint HS Mice",
         "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA/annotations",
    "etag":"-1919132670",     "creationDateid":null"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA",
   "stringAnnotations":{       "Diseaseversion":["0.0.1",
         "Cancer"description":null,
         ]"status":"Future",
      "Tumor / Tissue Type"uri":["/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA",
         "Glioblastoma"
  etag":"1025901212",
   ],       "Speciescreator":["Jonathan Flint",
         "HumancreationDate":1296182255070,
      ],       "InstitutionreleaseDate":[null,
         "TCGAlayers":[
      ],      {
  "Reference / PubMed ID":[          "18772890id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
     ]      },    "floatAnnotationstype":{"C",
             "Number of Samples"uri":["/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
         465.0   },
   ]     },    "dateAnnotations":{
     }    }

Get Datasets

Optional Parameters

offset - integer - 1-based pagination offset
limit - integer - maximum number of results to return
sort - string - the name of the primary field upon which to sort
ascending - boolean - whether or not to sort ascending

Request

Code Block
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset?limit=3"

Response

Code Block


HTTP/1.1 200 OK
ETag: 22610276
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:07:45 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked
{
   "results":[
      {
         "name":"Pediatric AML TARGET",
         "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA/annotations",
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA",
         "version":"0.0.1",
         "description":null,          "statusid":"In TransitionagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
         "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA",          "etagtype":"1703131409E",
         "creator":"Soheil Meshinchi",          "creationDateuri":1296182253120,
         "releaseDate":null,"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
            "layers":[},
            {
               "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
               "type":"CG",
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
            }
         ]
      },
      {
         {"name":"Glioblastoma TCGA",
         "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations",
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
   
           "typeversion":"E0.0.1",
 
             "uridescription":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"null,
            }"status":"Available",
         "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
  {                "id"etag":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA456728335",
     
         "typecreator":"G"null,
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA""creationDate":1296182238229,
         "releaseDate":null,
    }     "layers":[
    ]       }, {
     {          "nameid":"Flint HS Mice",agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
               "annotationstype":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA/annotations",C",
               "iduri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA",/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
            "version":"0.0.1",
},
        "description":null,    {
     "status":"Future",          "uriid":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
         "etag":"1025901212",
         "creatortype":"Jonathan Flint",
 E",
       "creationDate":1296182255070,          "releaseDateuri":null,"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
            "layers":[},
            {
               "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
               "type":"CG",
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
            },
          ]
 {           }
    "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
               "type":"E"],
   "totalNumberOfResults":10,
   "paging":{
       "urinext":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA/repo/v1/dataset?offset=4&limit=3"
   }
}

Get a Dataset

Request

Code Block

curl -i -H    },
            {
               "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
               "type":"GAccept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA"

Response

Code Block


HTTP/1.1 200 OK
ETag: 456728335
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:22:24 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked

{
   "name":"Glioblastoma TCGA",
   "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations",
   "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
   "version":"0.0.1",
   "description":null,
   "uristatus":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
            }Available",
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
   "etag":"456728335",
 ]  "creator":null,
    }"creationDate":1296182238229,
   "releaseDate":null,
  { "layers":[
      {
 "name":"Glioblastoma TCGA",          "annotationsid":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotationsagxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
         "idtype":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAC",
         "versionuri":"0.0.1",/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
      },
     "description":null, {
         "statusid":"AvailableagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
         "uritype":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDAE",
         "etaguri":"456728335",agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
      },
      "creator":null,{
         "creationDateid":1296182238229"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
         "releaseDate":nulltype":"G",
         "layersuri":["/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
      }
   ]
 {
               "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
               "type":"C",
               "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
            },
            }

Get Annotations for a Dataset

Request

Code Block
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations"

Response

Code Block


HTTP/1.1 200 OK
ETag: -1919132670
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:24:15 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked

{
   "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations",
   "etag":"-1919132670",
   "creationDate":null,
   "stringAnnotations":{
               "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA","Disease":[
         "Cancer"
      "type":"E"],
      "Tumor / Tissue Type":[
     "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"    "Glioblastoma"
      ],
 },     "Species":[
       {  "Human"
      ],
      "idInstitution":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",[
         "TCGA"
      "type":"G"],
      "Reference / PubMed ID":[
         "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
18772890"      ]
   },
 }  "floatAnnotations":{
      "Number ]of Samples":[
     }    ],465.0
   "totalNumberOfResults":10,   ]
"paging":{   },
   "nextdateAnnotations":"/repo/v1/dataset?offset=4&limit=3"{

   }
}

Create a Dataset

Request:

...

Code Block

HTTP/1.1 201 Created
ETag: 1736839268
Location: /repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYBAw
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
   "name":"test dataset",
   "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "version":"0.0.1",
   "creator":"fake creator",
   "description":null,
   "creationDate":1296595870715,
   "status":"not curated",
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "etag":"1309185941",
   "releaseDate":1254355200000,
   "layers":[
      {
         "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
         "type":"C",
         "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
      },
      {
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
         "type":"E",
         "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
      },
      {
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
         "type":"G",
         "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
      }
   ]
}

Add Annotations to a Dataset

First get the empty annotations container for your newly created dataset

...

Update a Dataset

Note that the creator and description fields have been changed but all others remain the same.

Request:

Code Block
curl -i -H httpAccept://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations

Response

Code Block


HTTP/1.1 200 OK
ETag: 923521
application/json -H Content-Type: application/json Transfer-Encoding:X chunked
Server: Jetty(6.1.x)

PUT -H ETag:1309185941 -d '{
   "idname":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "creationDate":nulltest dataset",
   "uriannotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "etagid":"923521agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "stringAnnotations":{

   },
   "floatAnnotations":{

   },
   "dateAnnotations":{

   }
}

Request

Code Block


curl -i -H Accept:application/json -H Content-Type:application/json -X PUT -H ETag:923521 -d '{
   "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"version":"0.0.1",
   "creator":"updated creator",
   "description":"I just added a description",
   "creationDate":1296595870715,
   "creationDate":nullstatus":"not curated",
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "etag":"9235211309185941",
   "stringAnnotationsreleaseDate":{1254355200000,
        "Experimental Design Templates"layers":["exp-122887", "exp-97765"]
   },   {
"floatAnnotations":{         "Number of Samples":[500]
   },
   "dateAnnotations":{id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
         "Publication Datetype":["2011-01-15"]C",
       } }' http"uri"://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations

Response

Code Block


HTTP/1.1 200 OK
ETag: -1638393853
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
   "/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
      },
      {
         "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYBwwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
   "creationDate":null,      "uritype":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYBww/annotationsE",
   "etag      "uri":"-1638393853agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
    "stringAnnotations":{  },
    "Experimental Design Templates":[{
         "exp-122887id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
         "exp-97765"type":"G",
      ]    },"uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
    "floatAnnotations":{  }
   ]
"Number}
of Samples":[
         500.0
      ]
   }' http://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw

Response

Code Block


HTTP/1.1 200 OK
ETag: -852418664
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
   "name":"test dataset",
   "dateAnnotations":{
  annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "Publication Dateid":["agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
         1295049600000
      ]"version":"0.0.1",
   }
}

Update a Dataset

Note that the creator and description fields have been changed but all others remain the same.

Request:

Code Block


curl -i -H Accept:application/json -H Content-Type:application/json -X PUT -H ETag:1309185941 -d '{"creator":"updated creator",
   "description":"I just added a description",
   "creationDate":1296595870715,
   "namestatus":"testnot datasetcurated",
   "annotationsuri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "idetag":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw-852418664",
   "versionreleaseDate":"0.0.1"1254355200000,
   "creatorlayers":"updated creator",[
      {
         "descriptionid":"I just added a descriptionagxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
    "creationDate":1296595870715,     "statustype":"not curatedC",
         "uri":"/repodatalayer/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",

  "etag":"1309185941",    "releaseDate":1254355200000},
   "layers":[       {
         "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
         "type":"CE",
         "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
      },
      {
         "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDAagxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
         "type":"EG",
         "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
      }
    },
      {
     ]
}

Add Annotations to a Dataset

First get the empty annotations container for your newly created dataset

Request

Code Block
curl -i http://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations

Response

Code Block


HTTP/1.1 200 OK
ETag: 923521
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
   "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDAagxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "creationDate":null,
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",
   "typeetag":"G923521",
   "stringAnnotations":{

   },
   "urifloatAnnotations":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"{

   },
   }"dateAnnotations":{

  ] }
' http://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw

...

Then you add/modify the annotations of interest and do a PUT.

Request

Code Block

HTTP/1.1 200 OK
ETag: -852418664curl -i -H Accept:application/json -H Content-Type: application/json Transfer-Encoding: chunked
Server: Jetty(6.1.x)

X PUT -H ETag:923521 -d '{
   "nameid":"test dataset"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "creationDate":null,
   "annotationsuri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw/annotations",",
   "etag":"923521",
   "stringAnnotations":{
        "Experimental Design Templates":["exp-122887", "exp-97765"]
   "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"},
   "versionfloatAnnotations":"0.0.1",{
   "creator":"updated creator",    "descriptionNumber of Samples":"I[500]
just added a description"},
   "creationDatedateAnnotations":1296595870715,{
        "statusPublication Date":"not curated",["2011-01-15"]
   }
 "uri":"}' http://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
   "etag":"-852418664",
   "releaseDate":1254355200000,
   "layers":[
      {
         /annotations

Response

Code Block


HTTP/1.1 200 OK
ETag: -1638393853
Content-Type: application/json
Transfer-Encoding: chunked
Server: Jetty(6.1.x)

{
   "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQwagxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYBww",
   "creationDate":null,
   "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYBww/annotations",
   "typeetag":"C-1638393853",
   "stringAnnotations":{
      "uriExperimental Design Templates":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"[
       },  "exp-122887",
    {     "exp-97765"
    "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",  ]
   },
   "typefloatAnnotations":"E",{
      "Number of  Samples"uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA":[
       },  500.0
    {  ]
   },
   "iddateAnnotations":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",{
      "Publication   Date"type":"G",:[
         "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"1295049600000
      }]
   ]}
}

Delete a Dataset

Request

Code Block
curl -i -X DELETE http://localhost:8080/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw

...

Versions Compared

Old Version 5

New Version 6

Key

Get

Datasets

Get Annotations for a Dataset

Get Datasets

Get a Dataset

Get Annotations for a Dataset

Create a Dataset

Add Annotations to a Dataset

Update a Dataset

Update a Dataset

Add Annotations to a Dataset

Delete a Dataset