...
Usage Examples
Get a Dataset
| Code Block |
|---|
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA"
HTTP/1.1 200 OK
ETag: 456728335
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:22:24 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked
{
"name":"Glioblastoma TCGA",
"annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations",
"id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
"version":"0.0.1",
"description":null,
"status":"Available",
"uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
"etag":"456728335",
"creator":null,
"creationDate":1296182238229,
"releaseDate":null,
"layers":[
{
"id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw",
"type":"C",
"uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw"
},
{
"id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA",
"type":"E",
"uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA"
},
{
"id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA",
"type":"G",
"uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA"
}
]
}
|
Get Annotations for a Dataset
| Code Block |
|---|
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations"
HTTP/1.1 200 OK
ETag: -1919132670
Content-Type: application/json
Date: Tue, 01 Feb 2011 18:24:15 GMT
Server: Google Frontend
Cache-Control: private, x-gzip-ok=""
Transfer-Encoding: chunked
{
"id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA",
"uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations",
"etag":"-1919132670",
"creationDate":null,
"stringAnnotations":{
"Disease":[
"Cancer"
],
"Tumor / Tissue Type":[
"Glioblastoma"
],
"Species":[
"Human"
],
"Institution":[
"TCGA"
]
},
"floatAnnotations":{
"Number of Samples":[
465.0
],
"Reference / PubMed ID":[
1.877289E7
]
},
"dateAnnotations":{
}
}
|
Get Datasets
Optional Parameters
- offset - integer - 1-based pagination offset
- limit - integer - maximum number of results to return
- sort - string - the name of the primary field upon which to sort
- ascending - boolean - whether or not to sort ascending
| Code Block |
|---|
curl -i -H Accept:application/json "http://deflaux-test.appspot.com/repo/v1/dataset?limit=3" HTTP/1.1 200 OK ETag: 22610276 Content-Type: application/json Date: Tue, 01 Feb 2011 18:07:45 GMT Server: Google Frontend Cache-Control: private, x-gzip-ok="" Transfer-Encoding: chunked { "results":[ { "name":"Pediatric AML TARGET", "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA/annotations", "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA", "version":"0.0.1", "description":null, "status":"In Transition", "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYgvcCDA", "etag":"1703131409", "creator":"Soheil Meshinchi", "creationDate":1296182253120, "releaseDate":null, "layers":[ { "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw", "type":"C", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA", "type":"E", "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA", "type":"G", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA" } ] }, { "name":"Flint HS Mice", "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA/annotations", "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA", "version":"0.0.1", "description":null, "status":"Future", "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQY2q0DDA", "etag":"1025901212", "creator":"Jonathan Flint", "creationDate":1296182255070, "releaseDate":null, "layers":[ { "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw", "type":"C", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA", "type":"E", "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA", "type":"G", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA" } ] }, { "name":"Glioblastoma TCGA", "annotations":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA/annotations", "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA", "version":"0.0.1", "description":null, "status":"Available", "uri":"/repo/v1/dataset/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYseQDDA", "etag":"456728335", "creator":null, "creationDate":1296182238229, "releaseDate":null, "layers":[ { "id":"agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw", "type":"C", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyEwsSDUdBRUpET0RhdGFzZXQYAQw" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA", "type":"E", "uri":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYiaECDA" }, { "id":"agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA", "type":"G", "uri":"/datalayer/agxkZWZsYXV4LXRlc3RyFQsSDUdBRUpET0RhdGFzZXQYmfIBDA" } ] } ], "totalNumberOfResults":10, "paging":{ "next":"/repo/v1/dataset?offset=4&limit=3" } } |
...