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- go to the Jenkins dashboard (http://ec2-54-245-172-65.us-west-2.compute.amazonaws.com:8080) and verify that the "rSynapseClient-master" job completed successfully
- In Jenkins, run deploy-rSynapseClient-master, and verify that it completes successfully
- log in to Belltown/sodo and upgrade the shared version of the R client. (You must be a member of the "radminssudoers" group to do this.):
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| Code Block |
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# Download source package from depot.sagebase.org # On Belltown (intel) sudo scp depot.sagebase.org:/data/srv/www/htdocs/Foswiki/CRAN/prod/2.14/src/contrib/synapseClient_0.20-0.tar.gz . module load R/2.14.1-intel sudo R CMD INSTALL synapseClient_0.20-0.tar.gz -l /gluster/toolbox/R/2. |
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14. |
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1-intel/ |
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lib64/R |
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> source('http://depot.sagebase.org/CRAN.R')
> pkgInstall("synapseClient")> q()
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/library module unload R/2.14.1-intel module load R/2.15.0-intel sudo R CMD INSTALL synapseClient_0.20-0.tar.gz -l /gluster/toolbox/R/2.14.1-intel/lib64/R/library # On sodo (amd) module load R/2.14.1-intel sudo R CMD INSTALL synapseClient_0.20-0.tar.gz -l /gluster/toolbox/R/2.14.1- |
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amd/lib64/ |
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> source('http://depot.sagebase.org/CRAN.R')
> pkgInstall("synapseClient")...
R/library
module unload R/2.14.1-amd
module load R/2.15.0-amd
sudo R CMD INSTALL synapseClient_0.20-0.tar.gz -l /gluster/toolbox/R/2.15.0-amd/lib64/R/library
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Note: The specifics will change as newer version of R are released.
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