Page Comparison

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schematic schema convert model.csv

What is JSON-LD?

Data models are formatted in JavaScript Object Notation-LinkedData. JSON-LD in schematic is its support by http://schema.orgdataset discoverability in search engines like: ​Dataset Search

https://cambridgesemantics.com/blog/semantic-university/learn-rdf/rdf-nuts-bolts-2/

https://json-ld.org/

Guide to Developing Data Models in JSON-LD

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The vocabulary should be relevant to the type of data that you are modeling.

Searching Ontologies

https://ontofox.hegroup.org/

Metadata Dictionary

AD Knowledge Portal Metadata Dictionary

https://sagebio.shinyapps.io/amp-ad-metadata-dictionary/

Data Curator App

https://dca-dev.app.sagebionetworks.org/
AD Portal DCA Test Project

https://github.com/adknowledgeportal/test-data-model

https://github.com/adknowledgeportal/test-data-model/blob/main/model-ad/model-ad.data.model.jsonld

https://github.com/adknowledgeportal/data_curator
https://github.com/adknowledgeportal/test-data-model

AD Portal DCA Test Project - Table

Annotate study folder with contentType = 'dataset'

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Templates

https://dca-docs.scrollhelp.site/DCA/Working-version/Project-Agnostic/organize-your-data-upload#OrganizeyourDataUpload-FlattenedDataLayoutExample

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https://dca-docs.scrollhelp.site/DCA/Working-version/ELITE/validate-and-submit-your-metadata

Schema Resources

https://ontofoxportal.hegroupincludedcc.org/dashboard

https://linkml.io/linkml/intro/tutorial.htmldocs.google.com/spreadsheets/d/1w6zDfz3_yrCjjrqfpXBGNmd0LZL4B03gr1KfzJtk5Cs/edit#gid=674286209

https://portal.includedcc.org/dashboard
https://linkml.io/schemasheets/#examples

https://docslinkml.google.comio/spreadsheetslinkml/d/1w6zDfz3_yrCjjrqfpXBGNmd0LZL4B03gr1KfzJtk5Cs/edit#gid=674286209
https://docs.google.com/presentation/d/129pSx58qDm7Y1OQmSSHKDq6tsoD3pW_gDRNXiX2rd0w/edit#slide=id.g4d21a8c2ba_0_11

/wiki/spaces/SCHEM/pages/2453176326

/wiki/spaces/SCHEM/pages/2458419217intro/tutorial.html

Glossary

Template

Manifest - metadata table submitted for dataset

https://github.com/adknowledgeportal/test-data-model/blob/main/model-ad/model-ad.data.model.jsonld

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https://www.synapse.org/#!Synapse:syn36759435/tables/
Add CSV + JSONLD to github – test-data-model

https://github.com/adknowledgeportal/test-data-model
https://github.com/adknowledgeportal/data_curator/blob/18dc00723f2e95a98525ff695401ac67e7785475/schematic_config.yml#L31

Data Model

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/wiki/spaces/SCHEM/pages/2645262364

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extract individual and specimen ID from filenames

http://regex101.com

Data Model

• Lref gdrive file
  url https://docs.google.com/document/d/1nZGLRKW5LXpY-LBrtrgs4MyO-fb0kDDeouEOvW36xo0/edit#heading=h.o7ihd22lafi

• https://github.com/Sage-Bionetworks/1kD-model

• /wiki/spaces/SCHEM/pages/2473623559

• OWL Tutorial

• https://schema.org/

• https://linkml.io/linkml/

• https://learnxinyminutes.com/docs/yaml/

• https://json-ld.org/

• http://vowl.visualdataweb.org/webvowl.html

• https://medium.com/wallscope/understanding-linked-data-formats-rdf-xml-vs-turtle-vs-n-triples-eb931dbe9827

• https://webprotege.stanford.edu/#projects/cb219a51-dd90-4921-bec4-c836bd96f680/edit/Properties?selection=ObjectProperty(%3Chttp://example.com/BallpointPenOntology/hasCharacteristic%3E)

“Manifest Templates”

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