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Need to run commands from ~/schematic

Data Model Development

Summary

A data model defines attributes (i.e. data elements) describing metadata associated with any given dataset type. The data model also describes relationships between these attributes.

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1. Attribute

2. Description

3. ValidValues

4. DependsOn

5. required

6. source

7. parent

8. properties

9. dependsOnComponent

Example Model

• Github: https://github.com/Sage-Bionetworks/schematic/blob/develop/tests/data/example.model.csv

• Formatted for readability:

  Lref gdrive file
  url https://docs.google.com/spreadsheets/d/1Wde5YBFtEa4GhO-smXgbVApGioBGNnc-95n4LY8YB_E/edit#gid=925738608

Generate JSON-LD from CSV

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extract individual and specimen ID from filenames

http://regex101.com

Data Model

• Lref gdrive file
  url https://docs.google.com/document/d/1nZGLRKW5LXpY-LBrtrgs4MyO-fb0kDDeouEOvW36xo0/edit#heading=h.o7ihd22lafi

• https://github.com/Sage-Bionetworks/1kD-model

• /wiki/spaces/SCHEM/pages/2473623559

• OWL Tutorial

• https://schema.org/

• https://linkml.io/linkml/

• https://learnxinyminutes.com/docs/yaml/

• https://json-ld.org/

• http://vowl.visualdataweb.org/webvowl.html

• https://medium.com/wallscope/understanding-linked-data-formats-rdf-xml-vs-turtle-vs-n-triples-eb931dbe9827

• https://webprotege.stanford.edu/#projects/cb219a51-dd90-4921-bec4-c836bd96f680/edit/Properties?selection=ObjectProperty(%3Chttp://example.com/BallpointPenOntology/hasCharacteristic%3E)

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