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pyenv install 3.10.11 pyenv virtualenv 3.10.11 schematic_3_10_11 pyenv activate schematic_3_10_11 pyenv -m pip install schematic_3_10_11 pip install schematicpy |
Create a data model formatted as a CSV
Where is the reference to how data model needs to be formatted?
Convert data model from CSV to JSONLD
schematic schema convert input.csv output.jsonld
schematic CLI reference -- schema convert CSV > JSONLD
AD Data Models https://github.com/adknowledgeportal/data-models
DCA app development version
https://dca-dev.app.sagebionetworks.org/
Abby's request for testing
https://sagebionetworks.slack.com/archives/C02A2FBN3G8/p1682116574295509
model-ad.data.model.jsonld https://github.com/adknowledgeportal/test-data-model/blob/main/model-ad/model-ad.data.model.jsonld
AD Portal DCA https://sagebio.shinyapps.io/adknowledgeportal-data-curator/
AD Portal DCA Test Project - Main https://www.synapse.org/#!Synapse:syn33582398/wiki/619343
github – data_curator https://github.com/adknowledgeportal/data_curator
github – test-data-model https://github.com/adknowledgeportal/test-data-model
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Annotate study folder with contentType = 'dataset'
https://www.synapse.org/#!Synapse:syn36759435/tables/
Add CSV + JSONLD to github – test-data-model
https://github.com/adknowledgeportal/test-data-model
data_curator - https://github.com/adknowledgeportal/data_curator/blob/18dc00723f2e95a98525ff695401ac67e7785475/schematic_config.yml#L31
Data Model Validation Rules
/wiki/spaces/SCHEM/pages/2645262364
RegEx - extract individual and specimen ID from filenames
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