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Assay | Germline SNV | Somatic SNV | Copy Number Variation (CNV) | Structural variants (SV) | Microsatellite Instability (MSI) | Raw counts |
WES | ✅ | ✅ | ✖️ | ✖️ | ✅ | |
WGS | ✅ | ✅ | ✅ | ✅ | ✅ | |
Bulk RNAseq | ✅ | |||||
Single Cell RNAseq | ✅ |
✅ The workflow is
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available for this datatype
✖️ The workflow is available for this data type, but the NF-OSI will not provide this processing. This decision follows from the recommendation of scientists and engineers at Sage who have worked with these data modalities and have noted various problems in interpretation of processed data from these workflows during downstream analysis.
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