Data in Synapse can be downloaded using our programmatic clients (Python, R, and command line), or from the Synapse UI. as well as the web client /wiki/spaces/DOCS/pages/2004254837. In this guide, you will learn the basic commands to download data programmatically.

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Finding and Downloading Files via Annotations

Files can be annotated/wiki/spaces/DOCS/pages/2667708522 in Synapse to help organize your data and make files findable. In order to search the annotations, a file view must be created you must create a /wiki/spaces/DOCS/pages/2011070739 first.

For example, the PCBC Project has a table listing sequencing data files that are annotated. To find all mRNA fastq files originating from CD34+ cells in the we can query by:

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